New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3461173 =	44 (0.820)	4 (0.080)	3/244	NT	10.4%	coding (202/1017 nt)	PP_3076	ABC transporter permease
	?	NC_002947	3461271 =	28 (0.560)					coding (104/1017 nt)	PP_3076	ABC transporter permease

GCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGCAGGGT  >  NC_002947/3461129‑3461418                                                                                                                                                |                                                                                                                                                    gcgcACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAgg                                                                                                                                                <  6:25653/148‑1 (MQ=255)  cgcACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCt                                                                                                                                              <  2:335255/149‑1 (MQ=255)        tAGGCGCTGCGGTAGTCGGGCTGAGACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGagcag                                                                                                                                        >  3:183492/1‑149 (MQ=255)        tAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGagcag                                                                                                                                        <  3:328287/149‑1 (MQ=255)          ggCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAgcagca                                                                                                                                      <  6:239938/149‑1 (MQ=255)           gcgcTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGagcag                                                                                                                                        >  6:306571/1‑146 (MQ=255)                   gTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCGCGCGCAAAGGCTGAGCAGCAGAAGGCCg                                                                                                                              <  1:188731/149‑1 (MQ=255)                           gCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAaacaac                                                                                                                     <  4:271861/149‑1 (MQ=255)                                       cttGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACAcc                                                                                                         >  2:3336/2‑149 (MQ=255)                                          gCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAaacaa                                                                                                                      <  3:190442/133‑1 (MQ=255)                                          gCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAaacaa                                                                                                                      >  4:190442/1‑133 (MQ=255)                                            ccgccgAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACAcccagcc                                                                                                    <  4:183492/149‑1 (MQ=255)                                             CGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACAcccagcc                                                                                                    <  4:310399‑M1/148‑1 (MQ=255)                                               gccgaactggtggccaacgacaagccactgctgctgggctacaagggcaatgtgtacgttccggcgctcaaacgctacaccgagcagcagttcggcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACAcccagcc                                                                                                    >  6:209524‑M2/98‑147 (MQ=255)                                               gccgaactggtggccaacgacaagccactgctgctgggctacaagggcaatgtgtacgttccggcgctcaaacgctacaccgagcagcagttcggcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACAcccagcc                                                                                                    >  6:212863‑M2/98‑147 (MQ=255)                                                   ACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCTTTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGc                                                                                               >  1:101855‑M1/1‑147 (MQ=255)                                                   ACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCgg                                                                                             >  5:306571‑M1/1‑149 (MQ=255)                                                     TGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGGCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCGACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCAGGCAAACAACCACAGCGACCCCCAGCCCAGgcgggg                                                                                           <  4:125720‑M1/149‑3 (MQ=255)                                                          ctCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTggcg                                                                                        <  1:159772/147‑1 (MQ=255)                                                            cGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGgcggcg                                                                                     >  4:49654/1‑148 (MQ=255)                                                                   gCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGt                                                                              <  3:49654/148‑1 (MQ=255)                                                                              ccGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACgg                                                                  <  1:3336/149‑1 (MQ=255)                                                                                   aCGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGa                                                             <  1:296710/149‑1 (MQ=255)                                                                                       acacATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAgg                                                         >  5:299006/1‑149 (MQ=255)                                                                                        caagggcaatgtgtacgttccggcgctcaaacgctacaccgagcagcagttcggcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAg                                                          <  5:209524‑M2/92‑1 (MQ=255)                                                                                          agggcaatgtgtacgttccggcgctcaaacgctacaccgagcagcagttcggcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAgggg                                                       <  5:212863‑M2/95‑1 (MQ=255)                                                                                           aTTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGc                                                      >  1:45227/1‑148 (MQ=255)                                                                                           aTTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCCGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGc                                                      >  5:294420/1‑148 (MQ=255)                                                                                           aTTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTAGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGt                                                                              >  2:156300/1‑124 (MQ=255)                                                                                               cccTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATa                                                  <  6:294420/148‑1 (MQ=255)                                                                                                      aGCCCAGCAGCAGTGGCTTGTCGTAGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGt                                          >  5:79390/1‑149 (MQ=255)                                                                                                         ccAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTgcg                                       >  5:264150/1‑149 (MQ=255)                                                                                                                    ggCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTGGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCg                            >  2:312859/1‑149 (MQ=255)                                                                                                                     gCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCg                            >  3:134249/1‑148 (MQ=255)                                                                                                                       ttGTCGTTGGCCACTAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATc                             <  5:29721/145‑1 (MQ=255)                                                                                                                       ttGTCGTTGGCCACTAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATc                             >  6:29721/1‑145 (MQ=255)                                                                                                                                   accaGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCggg             >  2:326401/1‑149 (MQ=255)                                                                                                                                   accaGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCggg             >  2:341087/1‑149 (MQ=255)                                                                                                                                   accaGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACACAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCggg             >  8:142685/1‑149 (MQ=255)                                                                                                                                           cggcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAg        >  1:185915‑M2/6‑147 (MQ=255)                                                                                                                                           cggcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGc       <  1:341087‑M2/143‑1 (MQ=255)                                                                                                                                             gcgCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGCAgg    <  3:310399‑M2/146‑1 (MQ=255)                                                                                                                                               gCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGCAGGGt  <  6:299006‑M2/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    GCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGCAGTTGCCCGCCGAACTGCTGCTCGGTGTAGCGTTTGAGCGCCGGAACGTACACATTGCCCTTGTAGCCCAGCAGCAGTGGCTTGTCGTTGGCCACCAGTTCG‑GCGCAAAGGCTGAGCAGCAGAAGGCCGGCAAACAACCACAGCGACACCCAGCCCAGGCGGTGGCGGCGAAAACGTTGCAGGCGACGGCGCGACAGGGGCGATAGCATCAGTGCGCCCTCGTATCGAAGTCGATGCGCGGGTCGAGCAGGGT  >  NC_002947/3461129‑3461418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.