New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3592423	45 (0.840)	3 (0.060)	3/254	NT	6.2%	coding (471/912 nt)	PP_3170	LysR family transcriptional regulator
	?	NC_002947	= 3592441	47 (0.910)					coding (489/912 nt)	PP_3170	LysR family transcriptional regulator

CGCCATGTCCTGCCGGTCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3592271‑3592423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgCCAGGCGACGGTGCGCGTCAGCAATTGCGAATCTTCCTTGGGGGCACCGATGCGCACGGCGACGTCCACGCCCTCTTCGACCAGATCAACGAAACGGTCGGTGAAGCGGATATCCGCCCGCAGTTCGGGCCATTGCTTGAGGTACTGG  <  NC_002947/3592441‑3592294                                                                                                                                                                                                                                                                                                               CGCCATGTCCTGCCGGTCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATT                                                                                                                                                          <  3:28763/149‑1  gaCATGTCCTGCCGGGCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCTGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTG                                                                                                                                                         <  8:265711/147‑1    CATGTCCTGCCGGTCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCTCCGACCGTTTCGTTGATCTGGTCGAAGAGGGCTTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCT                                                                                                                                                       <  3:179784/149‑1    CATGTCCTGCCGGTCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCT                                                                                                                                                       <  4:208594/149‑1                                        TGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGCCAGGCGACGGTGCGCGTCAGCAATTGCGAATCTT                                                                                                                   <  7:33463/149‑1                                                                                             CGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGCCAGGCGACGGTGCGCGTCAGCAA                                                                                                                              >  5:330793/1‑85                                                                                             CGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGCCAGGCGACGGTGCGCGTCAGCAA                                                                                                                              <  6:330793/85‑1                                                                                                                                                       CTGCCAGGCGACGGTGCGCGTCAGCAATTGCGAATCTTCCTTGGGGGCACCGATGCGCACGGCGACGTCCACGCCCTCTTCGACCAGATCAACGAAACGGTCGGTGAAGCGGATATCCGCCCGCAGTTCGGGCCATTGCTTGAGGTACT    <  3:245108/149‑1                                                                                                                                                         GCCAGGCGACGGTGCGCGTCAGCAATTGCGAATCTTCCTTGGGGGCACCGATGCGCACGGCGACGTCCACGCCCTCTTCGACCAGATCAACGAAACGGTCGGTGAAGCGGATATCCGCCCGCAGTTCGGGCCATTGCTTGAGGTACTGG  >  3:83645/1‑149                                                                                                                                                                                                                                                                                                               CGCCATGTCCTGCCGGTCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3592271‑3592423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgCCAGGCGACGGTGCGCGTCAGCAATTGCGAATCTTCCTTGGGGGCACCGATGCGCACGGCGACGTCCACGCCCTCTTCGACCAGATCAACGAAACGGTCGGTGAAGCGGATATCCGCCCGCAGTTCGGGCCATTGCTTGAGGTACTGG  <  NC_002947/3592441‑3592294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.