New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3592423	45 (0.840)	3 (0.060)	3/254	NT	6.2%	coding (471/912 nt)	PP_3170	LysR family transcriptional regulator
	?	NC_002947	= 3592441	47 (0.910)					coding (489/912 nt)	PP_3170	LysR family transcriptional regulator

TCCTGCCGGTCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTC  >  NC_002947/3592278‑3592571                                                                                                                                                  |                                                                                                                                                     tCCTGCCGGTCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGAcg                                                                                                                                                   >  3:146210/1‑149 (MQ=255)           ccTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCg                                                                                                                                         >  4:77418/1‑149 (MQ=255)                aCCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTgg                                                                                                                                    >  8:3795/1‑149 (MQ=255)                 ccAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGc                                                                                                                                   >  3:83645‑M2/1‑148 (MQ=255)                   aGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGcag                                                                                                                                 <  3:245108‑M2/149‑4 (MQ=255)                       ccTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGt                                                                                                                             >  3:116068/1‑149 (MQ=255)                         tCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTc                                                                                                                           >  2:225261/1‑149 (MQ=255)                           aaGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTc                                                                                                                           <  1:225261/147‑1 (MQ=255)                            aGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTg                                                                                                                        <  7:3795/149‑1 (MQ=255)                                 tGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGccaggcgacggtgcgcgtcagcaattgcgaatctt                                                                                                                   <  7:33463‑M1/149‑36 (MQ=255)                                   gCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCtgtg                                                                                                                 <  1:261092/149‑1 (MQ=255)                                   gCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCtgt                                                                                                                  <  4:116068/148‑1 (MQ=255)                                      cGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCa                                                                                                               >  6:67676/1‑148 (MQ=255)                                      cGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCAt                                                                                                              <  7:287217/149‑1 (MQ=255)                                      cGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAAATGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCAt                                                                                                              >  2:298307/1‑149 (MQ=255)                                           tggggtgggATTTCCGTTTCACGGACTTTTTCTTTTATGTGGTCTTAGTGTTTTTGGTCGTCTCCGTGCGCTTCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCt                                                                                                         <  1:110033/142‑1 (MQ=255)                                           tGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCt                                                                                                         >  7:50417/1‑149 (MQ=255)                                              gggcggATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCg                                                                                                      >  1:195351/1‑149 (MQ=255)                                                 cggATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTAc                                                                                                   <  4:146210/149‑1 (MQ=255)                                                       tCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGa                                                                                              >  7:94136/1‑148 (MQ=255)                                                        ccGCTTCACCGCCCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGaa                                                                                             >  4:36927/1‑148 (MQ=255)                                                         cGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGaaaa                                                                                           <  2:195351/149‑1 (MQ=255)                                                           cTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGc                                                                                         >  2:243178/1‑149 (MQ=255)                                                           cTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGc                                                                                         <  5:160161/149‑1 (MQ=255)                                                           cTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGc                                                                                         <  5:274339/149‑1 (MQ=255)                                                               accgaccgTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCgtg                                                                                      <  3:77418/148‑1 (MQ=255)                                                                ccgaccgTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCgtggt                                                                                    <  2:174102/149‑1 (MQ=255)                                                                   accgTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTa                                                                                 <  5:67676/149‑1 (MQ=255)                                                                         tCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCa                                                                            <  8:50417/148‑1 (MQ=255)                                                                           gTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGa                                                                          <  1:312020/148‑1 (MQ=255)                                                                            ttGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGAGCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGAt                                                                         >  4:27102/1‑148 (MQ=255)                                                                            ttGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTG‑CCCCAATGAAGATTCGGAATTTCTTACGCGCACCCTACGCTGGCCGCAGGTAGTTCCCGTTTCATCGCCTGGCTACCGTGAAAACCGTTGTGTACCGCatctta                                                                       >  8:143213/1‑144 (MQ=255)                                                                                  gctctgAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGc                                                                  <  7:211444/144‑1 (MQ=255)                                                                                    gTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGa                                                                >  2:169294/1‑149 (MQ=255)                                                                                    gTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAACTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCg                                                                    <  1:298307/145‑1 (MQ=255)                                                                                     tCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGAc                                                               <  3:36927/149‑1 (MQ=255)                                                                                      cGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGccaggcgacggtgcgcgtcagcaa                                                                                                                              >  5:330793‑M1/1‑61 (MQ=255)                                                                                      cGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGccaggcgacggtgcgcgtcagcaa                                                                                                                              <  6:330793‑M1/85‑25 (MQ=255)                                                                                      cGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGAcc                                                              >  4:141104/1‑149 (MQ=255)                                                                                        aaGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGc                                                                  >  8:211444/1‑143 (MQ=255)                                                                                        aaGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACctc                                                            >  8:51255/1‑149 (MQ=255)                                                                                                gTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCa                                                    >  4:318813/1‑149 (MQ=255)                                                                                                        cGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACa                                               >  8:227979/1‑146 (MQ=255)                                                                                                        cGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACa                                               <  7:227979/146‑1 (MQ=255)                                                                                                                 cATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTcc                                   <  4:245108/149‑1 (MQ=255)                                                                                                                      gTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTggcg                              <  3:318813/149‑1 (MQ=255)                                                                                                                           cccAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTcgcgggc                           >  8:132540/1‑147 (MQ=255)                                                                                                                              aaGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGaa                      <  1:169294/149‑1 (MQ=255)                                                                                                                                ggAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAgg                    <  1:243178/149‑1 (MQ=255)                                                                                                                                  aaGATTCGCAATTGCTGACGCGCACCGTCGCCTGGcagcaattgcgaatcttccttgggggcaccgatgcgcacggcgacgtccacgccctcttcgaccagatcaacgaaacggtcggtgaagcggatatccgcccgcagttcgggcca                  <  7:33463‑M2/149‑115 (MQ=255)                                                                                                                                      ttCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGc              >  3:76419/1‑149 (MQ=255)                                                                                                                                           aaTTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCGCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTgg         <  3:181795/149‑1 (MQ=255)                                                                                                                                             ttGCTGACGCGCACCGTCGCCTGGcagcaattgcgaatcttccttgggggcaccgatgcgcacggcgacgtccacgccctcttcg                                                                       <  6:330793‑M2/85‑62 (MQ=255)                                                                                                                                             ttGCTGACGCGCACCGTCGCCTGGcagcaattgcgaatcttccttgggggcaccgatgcgcacggcgacgtccacgccctcttcg                                                                       >  5:330793‑M2/1‑24 (MQ=255)                                                                                                                                                ctgccaggcgacggtgcgcgtcagcaattgcgaatcttccttgggggcaccgatgcgcacggcgacgtccacgccctcttcgaccagatcaacgaaacggtcggtgaagcggatatccgcccgcagttcgggccattgcttgaggtact    <  3:245108‑M1/149‑147 (MQ=255)                                                                                                                                                 tGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCttt   >  6:125833/1‑149 (MQ=255)                                                                                                                                                  gccaggcgacggtgcgcgtcagcaattgcgaatcttccttgggggcaccgatgcgcacggcgacgtccacgccctcttcgaccagatcaacgaaacggtcggtgaagcggatatccgcccgcagttcgggccattgcttgaggtactgg  >  3:83645‑M1/1‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TCCTGCCGGTCCTCGACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTC  >  NC_002947/3592278‑3592571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.