New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 359242345 (0.840)3 (0.060) 3/254 NT 6.2% coding (471/912 nt) PP_3170 LysR family transcriptional regulator
?NC_002947 = 3592441 47 (0.910)coding (489/912 nt) PP_3170 LysR family transcriptional regulator

ACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTCACACAGAAGCGGGGC  >  NC_002947/3592293‑3592586
                                                                                                                                                    |                                                                                                                                                 
aCCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTgg                                                                                                                                                   >  8:3795/1‑149 (MQ=255)
 ccAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGc                                                                                                                                                  >  3:83645‑M2/1‑148 (MQ=255)
   aGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGcag                                                                                                                                                <  3:245108‑M2/149‑4 (MQ=255)
       ccTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGt                                                                                                                                            >  3:116068/1‑149 (MQ=255)
         tCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTc                                                                                                                                          >  2:225261/1‑149 (MQ=255)
           aaGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTc                                                                                                                                          <  1:225261/147‑1 (MQ=255)
            aGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTg                                                                                                                                       <  7:3795/149‑1 (MQ=255)
                   gCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCtgtg                                                                                                                                <  1:261092/149‑1 (MQ=255)
                   gCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCtgt                                                                                                                                 <  4:116068/148‑1 (MQ=255)
                      cGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCa                                                                                                                              >  6:67676/1‑148 (MQ=255)
                      cGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCAt                                                                                                                             <  7:287217/149‑1 (MQ=255)
                      cGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAAATGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCAt                                                                                                                             >  2:298307/1‑149 (MQ=255)
                           tggggtgggATTTCCGTTTCACGGACTTTTTCTTTTATGTGGTCTTAGTGTTTTTGGTCGTCTCCGTGCGCTTCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCt                                                                                                                        <  1:110033/142‑1 (MQ=255)
                           tGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCt                                                                                                                        >  7:50417/1‑149 (MQ=255)
                              gggcggATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCg                                                                                                                     >  1:195351/1‑149 (MQ=255)
                                 cggATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTAc                                                                                                                  <  4:146210/149‑1 (MQ=255)
                                       tCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGa                                                                                                             >  7:94136/1‑148 (MQ=255)
                                        ccGCTTCACCGCCCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGaa                                                                                                            >  4:36927/1‑148 (MQ=255)
                                         cGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGaaaa                                                                                                          <  2:195351/149‑1 (MQ=255)
                                           cTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGc                                                                                                        <  5:160161/149‑1 (MQ=255)
                                           cTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGc                                                                                                        <  5:274339/149‑1 (MQ=255)
                                           cTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGc                                                                                                        >  2:243178/1‑149 (MQ=255)
                                               accgaccgTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCgtg                                                                                                     <  3:77418/148‑1 (MQ=255)
                                                ccgaccgTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCgtggt                                                                                                   <  2:174102/149‑1 (MQ=255)
                                                   accgTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTa                                                                                                <  5:67676/149‑1 (MQ=255)
                                                         tCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCa                                                                                           <  8:50417/148‑1 (MQ=255)
                                                           gTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGa                                                                                         <  1:312020/148‑1 (MQ=255)
                                                            ttGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGAGCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGAt                                                                                        >  4:27102/1‑148 (MQ=255)
                                                            ttGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCAATGAAGATTCGGAATTTCTTACGCGCACCCTACGCTGGCCGCAGGTAGTTCCCGTTTCATCGCCTGGCTACCGTGAAAACCGTTGTGTACCGCatctta                                                                                      >  8:143213/1‑144 (MQ=255)
                                                                  gctctgAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGc                                                                                 <  7:211444/144‑1 (MQ=255)
                                                                    gTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGa                                                                               >  2:169294/1‑149 (MQ=255)
                                                                    gTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAACTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCg                                                                                   <  1:298307/145‑1 (MQ=255)
                                                                     tCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGAc                                                                              <  3:36927/149‑1 (MQ=255)
                                                                      cGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGAcc                                                                             >  4:141104/1‑149 (MQ=255)
                                                                        aaGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGc                                                                                 >  8:211444/1‑143 (MQ=255)
                                                                        aaGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACctc                                                                           >  8:51255/1‑149 (MQ=255)
                                                                                gTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCa                                                                   >  4:318813/1‑149 (MQ=255)
                                                                                        cGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACa                                                              >  8:227979/1‑146 (MQ=255)
                                                                                        cGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACa                                                              <  7:227979/146‑1 (MQ=255)
                                                                                                 cATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTcc                                                  <  4:245108/149‑1 (MQ=255)
                                                                                                      gTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTggcg                                             <  3:318813/149‑1 (MQ=255)
                                                                                                           cccAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTcgcgggc                                          >  8:132540/1‑147 (MQ=255)
                                                                                                              aaGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGaa                                     <  1:169294/149‑1 (MQ=255)
                                                                                                                ggAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAgg                                   <  1:243178/149‑1 (MQ=255)
                                                                                                                  aaGATTCGCAATTGCTGACGCGCACCGTCGCCTGGcagcaattgcgaatcttccttgggggcaccgatgcgcacggcgacgtccacgccctcttcgaccagatcaacgaaacggtcggtgaagcggatatccgcccgcagttcgggcca                                 <  7:33463‑M2/149‑115 (MQ=255)
                                                                                                                      ttCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGc                             >  3:76419/1‑149 (MQ=255)
                                                                                                                           aaTTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCGCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTgg                        <  3:181795/149‑1 (MQ=255)
                                                                                                                             ttGCTGACGCGCACCGTCGCCTGGcagcaattgcgaatcttccttgggggcaccgatgcgcacggcgacgtccacgccctcttcg                                                                                      <  6:330793‑M2/85‑62 (MQ=255)
                                                                                                                             ttGCTGACGCGCACCGTCGCCTGGcagcaattgcgaatcttccttgggggcaccgatgcgcacggcgacgtccacgccctcttcg                                                                                      >  5:330793‑M2/1‑24 (MQ=255)
                                                                                                                                 tGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCttt                  >  6:125833/1‑149 (MQ=255)
                                                                                                                                      cgcACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTcacac             <  8:94136/149‑1 (MQ=255)
                                                                                                                                         aCCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCAATGCCCTGGCGCTTTCACACAGa          <  7:51255/149‑1 (MQ=255)
                                                                                                                                           cGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTCACACAGAAg        <  3:141104/149‑1 (MQ=255)
                                                                                                                                             tCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCGACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTCACACAGAAGCg      >  5:61429/1‑149 (MQ=255)
                                                                                                                                             tCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGAGCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTCACACAGAAGCg      >  5:26312/1‑149 (MQ=255)
                                                                                                                                               gCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTCACACAGAAGCgg     <  7:132540/148‑1 (MQ=255)
                                                                                                                                                 cTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTCACACAGAAGCGGGGc  >  1:79703/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
ACCAGTACCTCAAGCAATGGCCCGAACTGCGGGCGGATATCCGCTTCACCGACCGTTTCGTTGATCTGGTCGAAGAGGGCGTGGACGTCGCCGTGCGCATCGGTGCCCCCAAGGAAGATTCGCAATTGCTGACGCGCACCGTCGCCTGGCAGCAGTTCGTGACCTGTGCATCGCCTGCGTACCTGGAAAAGCGTGGTGTACCGCAGATTCCCGGCGACCTCTATGGCCACGACAAGATCACCTTCCTGGCGGGCGAGAAGGCCATGCCCTGGCGCTTTCACACAGAAGCGGGGC  >  NC_002947/3592293‑3592586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.