| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4297836 | 50 (0.930) | 3 (0.060) | 3/242 | NT | 5.7% | coding (218/822 nt) | PP_3768 | shikimate 5‑dehydrogenase |
| ? | NC_002947 | = 4297923 | 54 (1.090) | coding (131/822 nt) | PP_3768 | shikimate 5‑dehydrogenase | |||||
AAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGACAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4297679‑4297836‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccatgcGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAATCGATCCCTCGGCGGCGGCCATCGAGTCGG < NC_002947/4297923‑4297786 AAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGACAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACC > 7:256229/1‑148AAAGGCCGTGACCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGACAAGGGTATTGACCGACTCGATGGCCGCCTCCGAGGGAGCGATTTCGTCGACC > 4:218799/1‑148 AAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGACAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACC > 6:226907/1‑147 CCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGACAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGC < 5:133889/148‑1 CGACTCGAGGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGG < 3:218799/149‑1 GATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTG > 3:119413/1‑142 GATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTG < 4:119413/142‑1 CAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAATCGATCCCTCGGCGGCGGCCATCGAGTCGG > 2:194955/1‑149 CAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAATCGATCCCTCGGCGGCGGCCATCGAGTCG < 4:231254/148‑1 CAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAATCGATCCCTCGGCGGCGGCCATCGAGTC < 6:309378/147‑1 CAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAAT < 1:196882/120‑1 CAAGGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAAT > 2:196882/1‑120 GGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAATCGATCCCTCGGCGGCG > 7:92088/1‑133 GGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAATCGATCCCTCGGCGGCG < 8:92088/133‑1 GGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGAC < 3:16198/112‑1 GGCCATGCGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGAC > 4:16198/1‑112 AAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGACAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4297679‑4297836‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggccatgcGCACCGATGACCTGCCGGCGGCGGTGGCAGGGATCCGCGCCCTGGGTATTCGCGGCTGCGGGGTGTCGATGCCGTACAAGGAAGCCTGCATGGCCTTGGTCGACGAAATCGATCCCTCGGCGGCGGCCATCGAGTCGG < NC_002947/4297923‑4297786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |