New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4297836	50 (0.930)	3 (0.060)	3/242	NT	5.7%	coding (218/822 nt)	PP_3768	shikimate 5‑dehydrogenase
	?	NC_002947	= 4297923	54 (1.090)					coding (131/822 nt)	PP_3768	shikimate 5‑dehydrogenase

CCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGA  >  NC_002947/4297689‑4297976                                                                                                                                                     |                                                                                                                                             cccGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGC                                                                                                                                              <  5:133889‑M1/148‑1 (MQ=255)  ccGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAg                                                                                                                                            >  7:260002/1‑149 (MQ=255)   cGGATCTACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACCCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAgg                                                                                                                                           <  1:79611/149‑1 (MQ=255)       tCGACCTGAAGCTGAGCCAGCAATTCGCGCNCGGCCAGCAAATCGGTGTTGTACGCCTAGAGGTGGCCATTGCAATTCA‑CAAGGGTATAGACCGACTCGATGGCCGCCGCCGAGCGATAGATTTCGTCGACCAAGGCCATGCAGGCTTc                                                                                                                                       >  1:27234/1‑149 (MQ=255)          aCCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCTATGCAGGCTTCCtt                                                                                                                                    >  6:51500/1‑149 (MQ=255)           ccTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTg                                                                                                                                   >  5:170101/1‑149 (MQ=255)            cTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTg                                                                                                                                   >  2:8707/1‑148 (MQ=255)                   tGAGCCAGCAATTGGCGCACGGCCAGGTAACCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCAt                                                                                                                           >  3:6910/1‑149 (MQ=255)                    gAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATc                                                                                                                          >  1:324393/1‑149 (MQ=255)                      gCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGa                                                                                                                        <  8:256229/149‑1 (MQ=255)                       ccAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGa                                                                                                                        >  4:163104/1‑148 (MQ=255)                       ccAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGa                                                                                                                        >  3:143056/1‑148 (MQ=255)                       ccAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTAAGCAAGGGTATTCACCGACTCGATGGCCGCCGCGGCGGAAGCGATTTCTTCGACCAAGGCAATGCAGGATTCGTTGAACGGCAGCgc                                                                                                                        >  1:268201/1‑148 (MQ=255)                        cAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAg                                                                                                                                            >  6:311414/1‑127 (MQ=255)                                   gcACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCcg                                                                                                           >  2:243645/1‑149 (MQ=255)                                    cACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCcgc                                                                                                          <  6:170101/149‑1 (MQ=255)                                       ggCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGaa                                                                                                       <  6:41515/149‑1 (MQ=255)                                           aGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATAcc                                                                                                   >  4:160807/1‑149 (MQ=255)                                                     tgttgtACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCgg                                                                                         <  3:160807/149‑1 (MQ=255)                                                         gtACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCa                                                                                                 >  2:155794/1‑137 (MQ=255)                                                         gtACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCa                                                                                                 <  1:155794/137‑1 (MQ=255)                                                          tACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATcc                                                                                     <  8:260002/148‑1 (MQ=255)                                                                     gTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCt                                                                                   >  1:190/1‑139 (MQ=255)                                                                     gTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCt                                                                                   <  2:190/139‑1 (MQ=255)                                                                         ccATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCAACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCgg                                                                     >  2:112775/1‑149 (MQ=255)                                                                          cATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGc                                                                    <  4:6910/149‑1 (MQ=255)                                                                            ttGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCTATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAg                                                                  <  5:51500/149‑1 (MQ=255)                                                                            ttGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAg                                                                  <  6:23561/149‑1 (MQ=255)                                                                               cAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGt                                                                >  7:51730/1‑148 (MQ=255)                                                                                aaTTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCa                                                              >  1:194955/1‑149 (MQ=255)                                                                                    gA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCg                                                           <  2:157829/148‑1 (MQ=255)                                                                                     a‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCAACGGt                                                         >  3:74537/1‑149 (MQ=255)                                                                                        aaGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTgc                                                       <  2:324393/149‑1 (MQ=255)                                                                                                   ccGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggccttg                                            >  2:194955‑M2/1‑138 (MQ=255)                                                                                                    cGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggccttg                                            <  4:231254‑M2/148‑12 (MQ=255)                                                                                                    cGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTgt                                           <  7:104637/149‑1 (MQ=255)                                                                                                    cGACTCGAGGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttgg                                           <  3:218799‑M1/149‑100 (MQ=255)                                                                                                     gACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggccttg                                            <  6:309378‑M2/147‑12 (MQ=255)                                                                                                     gACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTgta                                          <  2:268201/149‑1 (MQ=255)                                                                                                     gACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTgta                                          <  4:143056/149‑1 (MQ=255)                                                                                                      aCTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTgtag                                         >  4:103502/1‑149 (MQ=255)                                                                                                       cTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCCGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTgtag                                         >  7:158060/1‑148 (MQ=255)                                                                                                          gATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttg                                            <  4:119413‑M1/142‑99 (MQ=255)                                                                                                          gATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttg                                            >  3:119413‑M1/1‑44 (MQ=255)                                                                                                          gATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTgtagta                                       <  1:243645/147‑1 (MQ=255)                                                                                                          gATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGtagtag                                      <  3:103502/148‑1 (MQ=255)                                                                                                           aTGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTc                                                               >  7:44072/1‑122 (MQ=255)                                                                                                           aTGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTc                                                               <  8:44072/122‑1 (MQ=255)                                                                                                              gccgccgccGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTc                                 <  3:231254/149‑1 (MQ=255)                                                                                                                cgccgccgAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggcc                                               <  8:92088‑M2/133‑9 (MQ=255)                                                                                                                cgccgccgAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggcc                                               >  7:92088‑M2/1‑125 (MQ=255)                                                                                                                         gggATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAAct                      >  6:97174/1‑149 (MQ=255)                                                                                                                          ggATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAActg                     >  5:127435/1‑149 (MQ=255)                                                                                                                           gATCGATTTCGTCAACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAActgc                    <  1:112775/149‑1 (MQ=255)                                                                                                                            aTCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAActgct                   >  1:145826/1‑149 (MQ=255)                                                                                                                             tCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAActgctg                  <  5:309378/149‑1 (MQ=255)                                                                                                                               gATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTgg                 >  6:11498/1‑148 (MQ=255)                                                                                                                                aTTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggccttg                                            <  1:196882‑M2/120‑12 (MQ=255)                                                                                                                                aTTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggccttg                                            >  2:196882‑M2/1‑109 (MQ=255)                                                                                                                                    cgtcgAGCAAGGCCATGCAGGCTTCCTTGTACGGCATCGTCACGCCGCAGCCGCGAATAGCCAGTGCGCGGATCCCTGCCTCCTGCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCATCTGCTGGTACAg            <  2:27234/148‑1 (MQ=255)                                                                                                                                     gtcgACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggcc                                               >  4:16198‑M2/1‑104 (MQ=255)                                                                                                                                     gtcgACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggcc                                               <  3:16198‑M2/112‑9 (MQ=255)                                                                                                                                        gACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAggtggt       >  4:189224/1‑149 (MQ=255)                                                                                                                                          ccAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggccttggtcgacgaaatcgatccctcggcggcggccctcgagtcg     <  3:218799‑M2/149‑51 (MQ=255)                                                                                                                                           cAAGGCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgacgaaatcgatccctcggcggcggccatcgagtcgg    >  2:194955‑M1/1‑11 (MQ=255)                                                                                                                                           cAAGGCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgacgaaatcgatccctcggcggcggccatcgagtcg     <  4:231254‑M1/148‑138 (MQ=255)                                                                                                                                           cAAGGCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgacgaaatcgatccctcggcggcggccatcgagtc      <  6:309378‑M1/147‑137 (MQ=255)                                                                                                                                           cAAGGCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgacgaaat                                 >  2:196882‑M1/1‑11 (MQ=255)                                                                                                                                           cAAGGCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgacgaaat                                 <  1:196882‑M1/120‑110 (MQ=255)                                                                                                                                           cAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggccttggtcgacgaaatcgatccctcggcggcggccatc           >  3:119413‑M2/1‑98 (MQ=255)                                                                                                                                           cAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCgcatggccttggtcgacgaaatcgatccctcggcggcggccatc           <  4:119413‑M2/142‑45 (MQ=255)                                                                                                                                           cAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTTGTACAGGTGGTtgt    <  3:163104/149‑1 (MQ=255)                                                                                                                                            aaGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTtgtg   <  6:127435/149‑1 (MQ=255)                                                                                                                                              ggCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgacgaaatcgatccctcggcggcg                 >  7:92088‑M1/1‑8 (MQ=255)                                                                                                                                              ggCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgacgaaatcgatccctcggcggcg                 <  8:92088‑M1/133‑126 (MQ=255)                                                                                                                                              ggCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgac                                      <  3:16198‑M1/112‑105 (MQ=255)                                                                                                                                              ggCCATGCgcaccgatgacctgccggcggcggtggcagggatccgcgccctgggtattcgcggctgcggggtgtcgatgccgtacaaggaagcctgcatggccttggtcgac                                      >  4:16198‑M1/1‑8 (MQ=255)                                                                                                                                               gCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGa  >  8:79043/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                             CCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGTTGTACGCCTTGAGGTGGCCATTGCAATTGA‑CAAGGGTATTGACCGACTCGATGGCCGCCGCCGAGGGATCGATTTCGTCGACCAAGGCCATGCAGGCTTCCTTGTACGGCATCGACACCCCGCAGCCGCGAATACCCAGGGCGCGGATCCCTGCCACCGCCGCCGGCAGGTCATCGGTGCGCATGGCCTTGTAGTAGAAGTCCAGGCCCAACTGCTGGTACAGGTGGTTGTGA  >  NC_002947/4297689‑4297976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.