New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4925636 =	54 (1.000)	4 (0.080)	4/256	NT	6.9%	coding (390/858 nt)	PP_4335	flagellar motor protein
	?	NC_002947	4925682 =	55 (1.050)					coding (344/858 nt)	PP_4335	flagellar motor protein

CCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGCGACCAATGTCGACCCGTTGAAAACCATCAGCGATGACGTGCGCGATGCCTTCGGCGACCTGATCAACAGCGACCAGATGACCGTGCGCGGCAACGAGCTGTGGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4925785‑4925636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGCTCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCG  >  NC_002947/4925682‑4925826                                                                                                                                                                                                                                                                                                         CCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGCGACCAATGTCGACCCGTTGAAAACCATCAGCGATGACGTGCGCGATGCCTTCGGCGACCTGATCAACAGCGACCAGATGACCGTGCGCGGCAACGAGCTGTGGAT                                                                                                                                                    <  8:165732/149‑1                                                                                                    GACCTGATCAACAGCGACCAGATGACCGTGCGCGGCAACGAGCTGTGGATCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTC                                                                  <  5:80817/132‑1                                                                                                    GACCTGATCAACAGCGACCAGATGACCGTGCGCGGCAACGAGCTGTGGATCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTC                                                                  >  6:80817/1‑132                                                                                                      CCTGATCAACAGCGACCAGATGACCGTGCGCGGCAACGAGCTGTGGATCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGCTCGCTGTCTTTGAC                                                 >  1:240062/1‑147                                                                                                                     CCAGATGACCGTGCGCGGCAACGAGCTGTGGATCAGGTCGCCGAAGGCATCGCGCACGTCATCGGTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGCTCGCTGTCTTTGACCAGCGGTTCGGCCGGGC                                <  2:240062/149‑1                                                                                                                                                   GATCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGCTCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATC   <  8:267795/148‑1                                                                                                                                                    ATCAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGCTCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCG  <  1:14728/148‑1                                                                                                                                                                                                                                                                                                         CCGCTGGTCAAAGACAGCGAGCAGACCGAAGCGGGCCTGGCGGCGACCAATGTCGACCCGTTGAAAACCATCAGCGATGACGTGCGCGATGCCTTCGGCGACCTGATCAACAGCGACCAGATGACCGTGCGCGGCAACGAGCTGTGGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4925785‑4925636 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcAGGTCGCCGAAGGCATCGCGCACGTCATCGCTGATGGTTTTCAACGGGTCGACATTGGTCGCCGCCAGGCCCGCTTCGGTCTGCTCGCTGTCTTTGACCAGCGGTTCGGCCGGGCGCACGCTGAGCGGCTGCTCATCGCCAATCG  >  NC_002947/4925682‑4925826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.