| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5165795 = | 45 (0.840) | 4 (0.080) | 4/254 | NT | 7.7% | coding (2085/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
| ? | NC_002947 | 5165832 = | 53 (1.020) | coding (2048/3906 nt) | hrpA | ATP‑dependent helicase HrpA | |||||
GCATGGTGGCCAAGATCGAGCCGGACTGGATCGAGCCGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5165838‑5165795‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCA > NC_002947/5165832‑5165978 GCATGGTGGCCAAGATCGAGCCGGACTGGATCGAGCCGCTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGC < 3:261562/146‑1GCATGGTGGCCAAGATCGAGCCGGACTGGATCGAGCCGCTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGC > 4:261562/1‑146 ATGGTGGCCAAGATCGAGCCGGACTGGATCGAGCCGCTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCT > 3:234780/1‑148 AGCCGCTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTC < 4:234780/149‑1 GGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTC < 1:202908/145‑1 CCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCTCCCTCTTCGGTCTTCTGGCCA < 3:227808/149‑1 CCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCC > 7:32441/1‑148 GCATGGTGGCCAAGATCGAGCCGGACTGGATCGAGCCGCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5165838‑5165795‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCA > NC_002947/5165832‑5165978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |