New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5165795 =	45 (0.840)	4 (0.080)	4/254	NT	7.7%	coding (2085/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	5165832 =	53 (1.020)					coding (2048/3906 nt)	hrpA	ATP‑dependent helicase HrpA

GGCCGACCAGGATCAGCCCGTAGAGCGTGATCTGCTCGTAGGCCACCACCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCA  >  NC_002947/5165689‑5165978                                                                                                                                                |                                                                                                                                                   agcggcgcttctgggtgcatccatcttcgggcctggggcgcaagcgcccgcagtgggtcatggctgccgagctggtcgaaaccaccaagctgtatgcgcgcatggtGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCAt                                                                                                                                                >  3:234780‑M1/107‑148 (MQ=255)     gcgcttctgggtgcatccatcttcgggcctggggcgcaagcgcccgcagtgggtcatggctgccgagctggtcgaaaccaccaagctgtatgcgcgcatggtGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATgc                                                                                                                                              >  4:261562‑M1/103‑146 (MQ=255)     gcgcttctgggtgcatccatcttcgggcctggggcgcaagcgcccgcagtgggtcatggctgccgagctggtcgaaaccaccaagctgtatgcgcgcatggtGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATgc                                                                                                                                              <  3:261562‑M1/44‑1 (MQ=255)           gATCAGCCCGTAGAGCGTGATCTGCTCGTAGGCCACCACCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATa                                                                                                                                       >  1:78628/1‑147 (MQ=255)                       gagCGTGATCTGCTCGTAGGCCACCACCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGttt                                                                                                                         <  2:237748/149‑1 (MQ=255)                             gATCTGCTCGTAGGCCACCACCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGAc                                                                                                                     >  8:168039/1‑147 (MQ=255)                                    tCGTAGGCCACCACCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCgg                                                                                                             >  3:213861/1‑148 (MQ=255)                                        aGGCCACCACCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGc                                                                                                         >  1:59423/1‑148 (MQ=255)                                          gCCACCACCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCAt                                                                                                      >  1:181472/1‑149 (MQ=255)                                            caccacCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGa                                                                                                    >  2:49116/1‑149 (MQ=255)                                             accaccTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGAc                                                                                                   >  7:58329/1‑149 (MQ=255)                                                accTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCa                                                                                                <  8:58329/149‑1 (MQ=255)                                                 ccTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCAc                                                                                               >  4:227808/1‑149 (MQ=255)                                                     cccGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTg                                                                                             <  2:59423/147‑1 (MQ=255)                                                        gcgcTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGtt                                                                                                                          <  4:77034/115‑1 (MQ=255)                                                        gcgcTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGtt                                                                                                                          >  3:77034/1‑115 (MQ=255)                                                          gcTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGgcgc                                                                                      >  3:286959/1‑149 (MQ=255)                                                            ttcttcTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCtt                                                                                    >  7:186676/1‑149 (MQ=255)                                                                   cccAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGccc                                                                              >  3:261699/1‑148 (MQ=255)                                                                    ccAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGccc                                                                              >  1:211016/1‑147 (MQ=255)                                                                    ccAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGccc                                                                              >  5:301867/1‑147 (MQ=255)                                                                       gTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGc                                                                         >  4:325550/1‑149 (MQ=255)                                                                        tGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGcc                                                                        <  2:78628/149‑1 (MQ=255)                                                                            gCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGaa                                                                    <  3:98914/149‑1 (MQ=255)                                                                            gCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGaa                                                                    <  3:23602/149‑1 (MQ=255)                                                                             cTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCg                                                                      >  4:257662/1‑146 (MQ=255)                                                                              tCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCg                                                                      >  4:228769/1‑145 (MQ=255)                                                                              tCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCAAGCGcccgcagt                                                                         <  2:287336/142‑6 (MQ=255)                                                                                gAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAgatg                                                                >  2:202908/1‑149 (MQ=255)                                                                                gAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAga                                                                  <  3:228769/147‑1 (MQ=255)                                                                                 aaaTGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAgatgg                                                               <  2:211016/149‑1 (MQ=255)                                                                                  aaTGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAgatgga                                                              <  6:301867/149‑1 (MQ=255)                                                                                      gTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCa                                                          >  7:55557/1‑149 (MQ=255)                                                                                        tcttctTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCAcc                                                        >  4:5405/1‑149 (MQ=255)                                                                                        tcttctTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCAcc                                                        >  8:300668/1‑149 (MQ=255)                                                                                               gATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGATCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAgc                                                 >  3:79327/1‑149 (MQ=255)                                                                                               gATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGaa                                                   <  3:325550/147‑1 (MQ=255)                                                                                               gATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAgc                                                 >  2:39206/1‑149 (MQ=255)                                                                                               gATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAgc                                                 >  2:33946/1‑149 (MQ=255)                                                                                                   aGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGATCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCTCCCAGAAGcgcc                                              <  4:79327/148‑1 (MQ=255)                                                                                                    gcatggtggccaagatcgagccggactggatcgagccgctggccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAgcgc                                               >  4:261562‑M2/45‑146 (MQ=255)                                                                                                    gcatggtggccaagatcgagccggactggatcgagccgctggccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAgcgc                                               <  3:261562‑M2/102‑1 (MQ=255)                                                                                                     gTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGc                                                                         <  4:27778/119‑1 (MQ=255)                                                                                                     gTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGc                                                                         >  3:27778/1‑119 (MQ=255)                                                                                                      atggtggccaagatcgagccggactggatcgagccgctggccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCt                                           >  3:234780‑M2/43‑148 (MQ=255)                                                                                                         ccggccAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACg                                       <  4:316333/149‑1 (MQ=255)                                                                                                                 cGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCt                               >  7:114290/1‑149 (MQ=255)                                                                                                                 cGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCt                               <  8:55557/149‑1 (MQ=255)                                                                                                                   gCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTgg                             <  4:213861/149‑1 (MQ=255)                                                                                                                    cTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGt                            <  3:257662/149‑1 (MQ=255)                                                                                                                     tCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTgg                             >  4:315489/1‑147 (MQ=255)                                                                                                                           cAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTa                           <  1:843/143‑1 (MQ=255)                                                                                                                           cAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTa                           >  2:843/1‑143 (MQ=255)                                                                                                                                cGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGcgccgc                                            <  2:17054/121‑1 (MQ=255)                                                                                                                                cGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGcgccgc                                            >  1:17054/1‑121 (MQ=255)                                                                                                                                  gCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCa                                                                            >  4:228598/1‑87 (MQ=255)                                                                                                                                  gCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCg              <  1:49116/149‑1 (MQ=255)                                                                                                                                  gCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCg              <  2:181472/149‑1 (MQ=255)                                                                                                                                  gCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCg              <  8:114290/149‑1 (MQ=255)                                                                                                                                     agccgctggccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGtc           <  4:234780‑M2/138‑1 (MQ=255)                                                                                                                                        tCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGtcttc        >  3:26641/1‑149 (MQ=255)                                                                                                                                            ggccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGtcttc        <  1:202908‑M2/141‑1 (MQ=255)                                                                                                                                              ccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCTCCCTCTTCGGTCTTCTGGCCa  <  3:227808‑M2/147‑1 (MQ=255)                                                                                                                                              ccACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGcc   >  7:32441‑M2/3‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                   GGCCGACCAGGATCAGCCCGTAGAGCGTGATCTGCTCGTAGGCCACCACCTGCCCGCGCTTCTTCTCCCAGTGCGGCTCGAAATGGTTCTTCTTGATCAGGTGGCCGGCCAGCGGCTCGATCCAGTCCGGCTCGATCTTGGCCACCATGCGCGCATACAGCTTGGTGGTTTCGACCAGCTCGGCAGCCATGACCCACTGCGGGCGCTTGCGCCCCAGGCCCGAAGATGGATGCACCCAGAAGCGCCGCTGACGGGCGCCCTGGTAGTCGCCCTCTTCGGTCTTCTGGCCA  >  NC_002947/5165689‑5165978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.