New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5270051 = | 35 (0.650) | 7 (0.140) | 6/254 | NT | 15.3% | coding (288/1371 nt) | radA | DNA repair enzyme |
? | NC_002947 | 5270112 = | 44 (0.850) | coding (227/1371 nt) | radA | DNA repair enzyme |
GCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5270199‑5270051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGACCAGG > NC_002947/5270112‑5270243 GCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTG > 1:314536/1‑149 ACGACCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACC > 1:315221/1‑149 CCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTG > 5:239187/1‑149 CCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTG > 7:38483/1‑149 GCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTG > 5:225965/1‑149 GCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTG < 6:239187/149‑1 GCGGCCTGGTGGATGGCTCGGTGGTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATG < 8:38483/149‑1 ATGGCTCGGTGGTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTCCGATCATGGTTTCGACCAGG < 2:315221/149‑1 GCAGCGGTCGCGCTGGCTGGACAGGGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGTTTCACGACCAGCAGCACCGAACTGGACCGCGTGCTGGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5270199‑5270051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGACCAGG > NC_002947/5270112‑5270243 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |