New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5270051 =	35 (0.650)	7 (0.140)	6/254	NT	15.3%	coding (288/1371 nt)	radA	DNA repair enzyme
	?	NC_002947	5270112 =	44 (0.850)					coding (227/1371 nt)	radA	DNA repair enzyme

CTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGC  >  NC_002947/5269904‑5270199                                                                                                                                                    |                                                                                                                                                     cTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATc                                                                                                                                                      <  8:305927/148‑1 (MQ=255)    gggTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGca                                                                                                                                                  >  2:181877/1‑149 (MQ=255)     ggTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGcac                                                                                                                                                 <  1:153326/149‑1 (MQ=255)     ggTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGcac                                                                                                                                                 <  1:181877/149‑1 (MQ=255)           cccAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGa                                                                                                                                           <  5:336629/149‑1 (MQ=255)               gccgccGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCa                                                                                                                                       <  2:330900/149‑1 (MQ=255)                cctggtcgaaaccatgatcggaagcggcggcgctgctgcacccagcagcggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCAt                                                                                                                                      <  2:315221‑M1/17‑1 (MQ=255)                ccgccgCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCAt                                                                                                                                      <  8:41475/149‑1 (MQ=255)                            catgatcgaaagcggcggcgctgctgcacccagcagcggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGgccgc                                                                                                                          <  8:38483‑M1/29‑1 (MQ=255)                                    ccTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAg                                                                                                                   >  2:14352/1‑148 (MQ=255)                                          gctgcGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCgg                                                                                                            <  8:130489/149‑1 (MQ=255)                                              cGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTc                                                                                                          >  1:49597/1‑147 (MQ=255)                                                 ctcctcCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGACCAGtt                                                                                                     >  7:98411/1‑149 (MQ=255)                                                  tcctccCCCGTGACATACAGGTCCCGCATGCCAACGGCAATGTTGCACAAGCTCTGTAGCAAAATGGACGACTTGCCGATCCCGGGGACACAGCCAATCAGCACCACCGAGCCATCCACCAGCCCGCCACCCAGCACGCGGACCACTTc                                                                                                    >  8:213174/1‑149 (MQ=255)                                                    ctccCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCgg                                                                                                  >  8:33999/1‑149 (MQ=255)                                                    ctccCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCgg                                                                                                  >  2:197318/1‑149 (MQ=255)                                                     tccCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCg                                                                                                   >  4:224044/1‑147 (MQ=255)                                                     tccCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCg                                                                                                   <  3:224044/147‑1 (MQ=255)                                                       ccccGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGt                                                                                                 <  4:74719/147‑1 (MQ=255)                                                        cccGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCAAATCAGCACACCCGAGCCATCAACCAGGCCGCCACCCAGCACGCGGGCCCGTGCGGtgct                                                                                              >  2:58092/1‑149 (MQ=255)                                                          cagcagcggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGtgctgc                                                                                            <  6:239187‑M1/59‑1 (MQ=255)                                                          cagcagcggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGtgctgc                                                                                            >  5:225965‑M1/91‑149 (MQ=255)                                                             cagcggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTgg                                                                                         >  5:239187‑M1/88‑149 (MQ=255)                                                             cagcggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTgg                                                                                         >  7:38483‑M1/88‑149 (MQ=255)                                                                 ggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGt                                                                                     >  1:315221‑M1/84‑149 (MQ=255)                                                                          ggCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCgg                                                                            <  1:14352/149‑1 (MQ=255)                                                                          ggCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCAAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCgg                                                                            <  7:213174/149‑1 (MQ=255)                                                                            cATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCAGATGCCGGGGTCACAGCCAATCAGCACAACCGAGCAATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGa                                                                          >  2:51954/1‑149 (MQ=255)                                                                                  cACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCt                                                                    >  6:329296/1‑149 (MQ=255)                                                                                   aCGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCgga                                                                           <  7:99392/141‑2 (MQ=255)                                                                                   aCGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCgga                                                                           >  8:99392/1‑140 (MQ=255)                                                                                               cacaAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTc                                                       >  2:64694/1‑149 (MQ=255)                                                                                                  aaGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGc                                                    <  5:329296/149‑1 (MQ=255)                                                                                                          tAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGt                                              <  2:49597/147‑1 (MQ=255)                                                                                                            gCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGAtt                                                                        >  3:144936/1‑119 (MQ=255)                                                                                                            gCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGAtt                                                                        <  4:144936/119‑1 (MQ=255)                                                                                                                       gACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCATGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCctg                               >  6:206089/1‑149 (MQ=255)                                                                                                                       gACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCctg                               >  7:222410/1‑149 (MQ=255)                                                                                                                             ccGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGcc                          <  1:64694/148‑1 (MQ=255)                                                                                                                               gATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTg                       >  2:271931/1‑149 (MQ=255)                                                                                                                               gATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGACCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTg                       >  6:169095/1‑149 (MQ=255)                                                                                                                                     ggggTCACCGCCAATCAGCACCACCGAGCAATACACCAGGCCGCAAACCAGCACGCGGTACAGTTCTTTGCTTCTGGTAGTGAAACGAGGGATTTGCTCGAAACTGACTTAGGCCAGGGTCTTGATCTGAGCCTTCTGCCCTTTccag                  >  5:339066/1‑148 (MQ=255)                                                                                                                                         tCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCcagccagc             >  3:74323/1‑149 (MQ=255)                                                                                                                                          cACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAgcg            >  2:314536/1‑149 (MQ=255)                                                                                                                                                cAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCGTCGACACTGACTTCGGCCAGGGGCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCg      >  5:262407/1‑149 (MQ=255)                                                                                                                                                 aaTCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCgc     >  1:67115/1‑149 (MQ=255)                                                                                                                                                    CAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCgctgc  >  1:314536‑M1/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGC  >  NC_002947/5269904‑5270199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.