New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5270051 =35 (0.650)7 (0.140) 6/254 NT 15.3% coding (288/1371 nt) radA DNA repair enzyme
?NC_002947 5270112 = 44 (0.850)coding (227/1371 nt) radA DNA repair enzyme

GACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGACCAGGGTGTTCCAGGCCCCGC  >  NC_002947/5269964‑5270259
                                                                                                                                                    |                                                                                                                                                     
cagcggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTgg                                                                                                                                                       >  7:38483‑M1/88‑149 (MQ=255)
cagcggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTgg                                                                                                                                                       >  5:239187‑M1/88‑149 (MQ=255)
    ggtcgcgctggctggacagggcagcaggcgcagatcaagaccctggccgaagtcagtgtcgaggaaatcccgcgtttcacgacCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGt                                                                                                                                                   >  1:315221‑M1/84‑149 (MQ=255)
             ggCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCgg                                                                                                                                          <  1:14352/149‑1 (MQ=255)
             ggCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCAAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCgg                                                                                                                                          <  7:213174/149‑1 (MQ=255)
               cATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCAGATGCCGGGGTCACAGCCAATCAGCACAACCGAGCAATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGa                                                                                                                                        >  2:51954/1‑149 (MQ=255)
                     cACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCt                                                                                                                                  >  6:329296/1‑149 (MQ=255)
                      aCGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCgga                                                                                                                                         >  8:99392/1‑140 (MQ=255)
                      aCGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCgga                                                                                                                                         <  7:99392/141‑2 (MQ=255)
                                  cacaAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTc                                                                                                                     >  2:64694/1‑149 (MQ=255)
                                     aaGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGc                                                                                                                  <  5:329296/149‑1 (MQ=255)
                                             tAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGt                                                                                                            <  2:49597/147‑1 (MQ=255)
                                               gCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGAtt                                                                                                                                      <  4:144936/119‑1 (MQ=255)
                                               gCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGAtt                                                                                                                                      >  3:144936/1‑119 (MQ=255)
                                                          gACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCATGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCctg                                                                                            >  6:206089/1‑149 (MQ=255)
                                                          gACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCctg                                                                                            >  7:222410/1‑149 (MQ=255)
                                                                ccGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGcc                                                                                      <  1:64694/148‑1 (MQ=255)
                                                                  gATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTg                                                                                   >  2:271931/1‑149 (MQ=255)
                                                                  gATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGACCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTg                                                                                   >  6:169095/1‑149 (MQ=255)
                                                                        ggggTCACCGCCAATCAGCACCACCGAGCAATACACCAGGCCGCAAACCAGCACGCGGTACAGTTCTTTGCTTCTGGTAGTGAAACGAGGGATTTGCTCGAAACTGACTTAGGCCAGGGTCTTGATCTGAGCCTTCTGCCCTTTccag                                                                              >  5:339066/1‑148 (MQ=255)
                                                                            tCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCcagccagc                                                                         >  3:74323/1‑149 (MQ=255)
                                                                             cACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAgcg                                                                        >  2:314536/1‑149 (MQ=255)
                                                                                  acgaccagcagcaccgaactggaccgcgtgctgggtggcggcctggtggatggctcggtggtgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGAcc                                                                   >  1:315221‑M2/67‑149 (MQ=255)
                                                                                   cAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCGTCGACACTGACTTCGGCCAGGGGCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCg                                                                  >  5:262407/1‑149 (MQ=255)
                                                                                    aaTCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCgc                                                                 >  1:67115/1‑149 (MQ=255)
                                                                                      ccagcagcaccgaactggaccgcgtgctgggtggcggcctggtggatggctcggtggtgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCgctg                                                               >  7:38483‑M2/63‑149 (MQ=255)
                                                                                      ccagcagcaccgaactggaccgcgtgctgggtggcggcctggtggatggctcggtggtgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCgctg                                                               >  5:239187‑M2/63‑149 (MQ=255)
                                                                                       CAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCgctgc                                                              >  1:314536‑M1/1‑149 (MQ=255)
                                                                                         gcagcaccgaactggaccgcgtgctgggtggcggcctggtggatggctcggtggtgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGctgctg                                                            >  5:225965‑M2/60‑149 (MQ=255)
                                                                                         gcagcaccgaactggaccgcgtgctgggtggcggcctggtggatggctcggtggtgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGctgctg                                                            <  6:239187‑M2/90‑1 (MQ=255)
                                                                                              accGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTgc                                                       <  7:48177/149‑1 (MQ=255)
                                                                                                cGAGCCAGCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTgcag                                                     <  1:58092/149‑1 (MQ=255)
                                                                                                      aTCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAgcgc                                               >  4:178797/1‑149 (MQ=255)
                                                                                                         caccaGGCCGCCACCCAGCACGCGGTCCTGTTCTGAGCTGCTGGTCGTGAAACGCGTGATTTCCTCGACACTGACTTCGGCCAGGGTCTTTATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCTCTGCTGCACCCAGCAgcggtc                                             <  6:262407/148‑4 (MQ=255)
                                                                                                          accaGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGcgccgcc                                           >  2:79417/1‑149 (MQ=255)
                                                                                                          accaGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGcgccgcc                                           >  2:247842/1‑149 (MQ=255)
                                                                                                                ccgccACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTc                                     <  1:247842/149‑1 (MQ=255)
                                                                                                                ccgccACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTc                                     <  3:178797/149‑1 (MQ=255)
                                                                                                                  gccACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGa                                   <  5:206089/149‑1 (MQ=255)
                                                                                                                  gccACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGa                                   <  7:33999/149‑1 (MQ=255)
                                                                                                                     aCCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCa                                <  8:98411/149‑1 (MQ=255)
                                                                                                                       gcggcctggtggatggctcggtggtgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATg                              <  8:38483‑M2/120‑1 (MQ=255)
                                                                                                                       ccAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTg                                                                                   >  5:76273/1‑96 (MQ=255)
                                                                                                                       ccAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTg                                                                                   <  6:76273/96‑1 (MQ=255)
                                                                                                                       ccAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATg                              >  1:213958/1‑149 (MQ=255)
                                                                                                                       ccAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATg                              >  3:10197/1‑149 (MQ=255)
                                                                                                                        cAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGcc                                                                                      <  5:30780/92‑1 (MQ=255)
                                                                                                                        cAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGcc                                                                                      >  6:30780/1‑92 (MQ=255)
                                                                                                                         aGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGt                            >  5:106608/1‑149 (MQ=255)
                                                                                                                            aCGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTc                         >  1:191500/1‑149 (MQ=255)
                                                                                                                              gcgGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGTATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATGTGCGCCTCTCTTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTc                         <  1:271931/149‑1 (MQ=255)
                                                                                                                              gcgGTCCAGTGCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGa                       <  8:222410/149‑1 (MQ=255)
                                                                                                                                   atggctcggtggtgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTCCGATCATGGTTTCGACCAgg                  <  2:315221‑M2/132‑1 (MQ=255)
                                                                                                                                     aGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGACCAGGgt                <  2:67115/149‑1 (MQ=255)
                                                                                                                                      gTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGACCAGGgtg               >  8:279957/1‑149 (MQ=255)
                                                                                                                                              ctgctgGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGACCAGGGTGTTCCAGGc       <  2:213958/149‑1 (MQ=255)
                                                                                                                                                    gTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGACCAGGGTGTTCCAGGCCCCGc  <  4:74323/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTCGACTTGCCGATGCCGGGGTCACCGCCAATCAGCACCACCGAGCCATCCACCAGGCCGCCACCCAGCACGCGGTCCAGTTCGGTGCTGCTGGTCGTGAAACGCGGGATTTCCTCGACACTGACTTCGGCCAGGGTCTTGATCTGCGCCTGCTGCCCTGTCCAGCCAGCGCGACCGCTGCTGGGTGCAGCAGCGCCGCCGCTTTCGATCATGGTTTCGACCAGGGTGTTCCAGGCCCCGC  >  NC_002947/5269964‑5270259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.