New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5334560	65 (1.210)	3 (0.060)	3/252	NT	5.2%	coding (990/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	= 5334646	47 (0.910)					coding (1076/2976 nt)	PP_4695	two‑component system sensor histidine kinase

CGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5334409‑5334560 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGCGATGCCCAGGCCCAGG  <  NC_002947/5334646‑5334500                                                                                                                                                                                                                                                                                                             CGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGC                                                                                                                                                        <  6:332605/149‑1      TTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGC                                                                                                                                                     <  4:85439/147‑1                                                                   CCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGAT                                                                                       >  7:78703/1‑148                                                                                                  CCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAA                                                       <  8:78703/149‑1                                                                                                       GCATCGCCGCCAACCACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAG                                                  <  7:177614/149‑1                                                                                                                                                       GCTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGCGATGCCCAGGCCCAGG  <  5:204050/149‑1                                                                                                                                                                                                                                                                                                             CGCTGTTCCTGCTGCTGATGAGCCTTGCCGTGCCGCTGGTGCTGTGGGCCGGCCTGCGCCTGGGCGCCAGCACCAACCCCGAGTACTTCACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5334409‑5334560 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggcTGGTAAAGCGGCAGCACCAGGTGGTTCAGGGCCATGCCCGACAGCGCCAGGGTGGTGACGATGATCAGGCCGCTGGCTGCCGACAGGCCGCCAATGTAGGCCAGCAGTGCCAATGCCTGGTTGTTGGCGGCGATGCCCAGGCCCAGG  <  NC_002947/5334646‑5334500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.