New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5334560	65 (1.210)	3 (0.060)	3/252	NT	5.2%	coding (990/2976 nt)	PP_4695	two‑component system sensor histidine kinase
	?	NC_002947	= 5334646	47 (0.910)					coding (1076/2976 nt)	PP_4695	two‑component system sensor histidine kinase

ACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGCCAACCTGGGCATCGT  >  NC_002947/5334498‑5334781                                                                                                                                                     |                                                                                                                                          aCCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCa                                                                                                                                           >  6:9950/1‑149 (MQ=255)   cctgggcctgggCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAgc                                                                                                                                         <  5:204050‑M2/149‑3 (MQ=255)            gggcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCgccggcc                                                                                                                                 >  4:295966/1‑148 (MQ=255)             ggcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCgccggcc                                                                                                                                 <  3:243405/147‑1 (MQ=255)              gcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAg                                                                                                                              <  5:301888/149‑1 (MQ=255)              gcATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAg                                                                                                                              <  4:65300/149‑1 (MQ=255)               cATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACTACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAgg                                                                                                                             <  1:55856/149‑1 (MQ=255)               cATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAgg                                                                                                                             <  1:200112/149‑1 (MQ=255)                aTCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAggg                                                                                                                            >  3:252980/1‑149 (MQ=255)                         aacaacCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTa                                                                                                                   <  3:295966/149‑1 (MQ=255)                            aacCAGGCATTGGCACTGATGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGCACCACCTGGTGCTGCAGCTTTACCAGCCGCCGGCCGAGGGAAACATCTACCg                                                                                                                >  8:253275/1‑149 (MQ=255)                             cccAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGt                                                                                                               <  6:179616/148‑1 (MQ=255)                              ccAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGtt                                                                                                              >  8:81918/1‑149 (MQ=255)                              ccAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGtt                                                                                                              >  5:116375/1‑149 (MQ=255)                                aGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTgg                                                                                                            >  3:154327/1‑149 (MQ=255)                                        gCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGCCAACATCTACCGTTGGCTGAA‑‑Gt                                                                                                   <  5:9950/148‑1 (MQ=255)                                          aCTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGa                                                                                                >  4:26549/1‑149 (MQ=255)                                                   cTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAgccgccaatgtaggccagcagtgccaatgcctggtggttggcggcgatgc                                                                                         <  7:177614‑M2/149‑51 (MQ=255)                                                    tACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGt                                                                                        >  2:141091/1‑147 (MQ=255)                                                    tACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGt                                                                                        <  1:141091/147‑1 (MQ=255)                                                     aCATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGc                                                                                      >  2:97363/1‑148 (MQ=255)                                                       aTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCAc                                                                                    <  8:116065/148‑1 (MQ=255)                                                       aTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCAc                                                                                    >  7:116065/1‑148 (MQ=255)                                                       aTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACt                                                                                   <  4:252980/149‑1 (MQ=255)                                                       aTTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACt                                                                                   <  5:312631/149‑1 (MQ=255)                                                        ttGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAgccgccaatgtaggccagcagtgccaatgcctggttgttggcggcgatgcccagg                                                                                    <  8:78703‑M2/149‑56 (MQ=255)                                                                   tCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCcat                                                                       <  2:201181/149‑1 (MQ=255)                                                                        agccagcGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCAtcatca                                                                  >  3:267830/1‑149 (MQ=255)                                                                         gccagcGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCAc                                                                 >  8:179759/1‑149 (MQ=255)                                                                         gccagcGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCAc                                                                 <  7:179759/149‑1 (MQ=255)                                                                          cctgcGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCAcc                                                                <  6:204050/146‑1 (MQ=255)                                                                          ccagcGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCAcc                                                                >  4:150391/1‑149 (MQ=255)                                                                                  cTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCtt                                                        >  5:72290/1‑149 (MQ=255)                                                                                  cTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCtt                                                        <  4:154327/149‑1 (MQ=255)                                                                                     atcatcGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTc                                                       <  3:26549/147‑1 (MQ=255)                                                                                      tcatcGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATg                                                    >  7:206876/1‑149 (MQ=255)                                                                                        atcGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAgccgccaatgtaggccagcagtgccaatgcctggttgttggcggcgatgcccaggcccagggtgaagtactcggggttggtgctgg                                                     >  7:78703‑M2/1‑62 (MQ=255)                                                                                        atcGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGtt                                                  <  2:261397/149‑1 (MQ=255)                                                                                                  cccTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGc                                        <  3:121353/149‑1 (MQ=255)                                                                                                  cccTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGc                                        <  4:267830/149‑1 (MQ=255)                                                                                                  cccTGGCGCTGTCGGGCATGGCCCAGTACCACCTTGTGCTGGCGCTTTTACAGCCGGCGGCCGATGGCAAAATCTACCGTTGGGTGTATTTTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGa                                          <  1:97363/149‑1 (MQ=255)                                                                                                           tGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTac                               >  6:63651/1‑149 (MQ=255)                                                                                                             tCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGGCAGAACTaccc                             >  6:138987/1‑148 (MQ=255)                                                                                                                    tGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGc                      <  3:150391/149‑1 (MQ=255)                                                                                                                       cccTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTg                   <  4:233531/149‑1 (MQ=255)                                                                                                                        ccTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTgg                  >  5:309943/1‑149 (MQ=255)                                                                                                                         cTGAAACACGTGGTGCTGCCTCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTTCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGc                 <  7:253275/149‑1 (MQ=255)                                                                                                                          tGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGc                 >  8:56794/1‑148 (MQ=255)                                                                                                                              ccaccTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGCCAAcc            >  6:280855/1‑149 (MQ=255)                                                                                                                               caccTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGCCAACCt           >  7:166779/1‑149 (MQ=255)                                                                                                                                  cTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGCCAACCTggg        >  3:194002/1‑149 (MQ=255)                                                                                                                                      tgctgcCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGCCAACCTGGGCAtc    >  5:78889/1‑149 (MQ=255)                                                                                                                                      tgctgcCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGCCAACCTGGGCAtc    >  5:83757/1‑149 (MQ=255)                                                                                                                                        ctgcCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGCCAACCTGGGCAtcgt  >  5:32092/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                          ACCCTGGGCCTGGGCATCGCCGCCAACAACCAGGCATTGGCACTGCTGGCCTACATTGGCGGCCTGTCGGCAGCCAGCGGCCTGATCATCGTCACCACCCTGGCGCTGTCGGGCATGGCCCTGAACCACCTGGTGCTGCCGCTTTACCAGCCGCCGGCCGAGGGCAACATCTACCGTTGGCTGAA‑‑GTGGACCCGCCGTGCACTGATCGTCGCCATCATCACCGCCGGCTTCATGTTCTACCTGAGCCAGAACTACCACCAGAGCCTGGCCAACCTGGGCATCGT  >  NC_002947/5334498‑5334781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.