New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5513267	28 (0.520)	3 (0.070)	3/212	NT	11.2%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5513323	25 (0.580)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

GACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5513094‑5513267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccggcctcttcgcgggtaaACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCAC  <  NC_002947/5513323‑5513178                                                                                                                                                                                                                                                                                                                                  GACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCG                                                                                                                                                                             >  5:287598/1‑149       GGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTG                                                                                                                                                                       <  6:46575/149‑1          TTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCG                                                                                                                                                                    >  2:90919/1‑149            CGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCG                                                                                                                                                                    <  7:688/147‑1             GTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGC                                                                                                                                                                  <  2:162640/148‑1              TCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCT                                                                                                                                                                <  8:209935/149‑1                 GCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTT                                                                                                                                                             >  1:331190/1‑149                   AGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGAGGAAGGCTCGCTGGATCACGTGCAGGCAGATGAGCGGGTGGTCGAGGTCTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCACTTCG                                                                                                                                                           >  1:244961/1‑149                    GCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGC                                                                                                                                                          <  6:28402/149‑1                          CCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAA                                                                                                                                                    >  2:85974/1‑149                                      CCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTATTAGCGGGTAAACCCcgtgcga                                                                                                                                         >  8:205025/1‑141                                                                               GAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAAC                                                                                                <  6:70235/148‑1                                                                                                           TCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAG                                                                                >  5:217598/1‑136                                                                                                           TCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAG                                                                                <  6:217598/136‑1                                                                                                                                                            CCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGCTACACCGCGCCCACCC                  >  7:205025/1‑149                                                                                                                                                                            TAACCCCGCTCCTACGACGGGAACCCCCCCATGCCATCACGCCCACTGTAGGACCGGGGTAACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCAC  <  7:298119/149‑1                                                                                                                                                                            TAAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGATGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCAC  <  7:15385/149‑1                                                                                                                                                                             AAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACAC                             <  3:206144/121‑1                                                                                                                                                                             AAACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGAGGCCCAGATACAC                             >  4:206144/1‑121                                                                                                                                                                                                                                                                                                                                  GACATGGGCTTCGTCGGCAGCATTGCCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5513094‑5513267 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccggcctcttcgcgggtaaACCCGCTCCTACGACGGGAACCGCCCCATGGCATTACGCCCACTGTAGGAACGGGGTTACCCGCGAAGAGGCCGGCACAGGCGCCAAAAATTCAAATCCGGTCAGCGGCCCAGATACACCTCGACCACCCGCTCATCTGCCTGCAC  <  NC_002947/5513323‑5513178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.