New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5513267	28 (0.520)	3 (0.070)	3/212	NT	11.2%	intergenic (+45/‑109)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	= 5513323	25 (0.580)					intergenic (+101/‑53)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

CCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCG  >  NC_002947/5513119‑5513412                                                                                                                                                     |                                                                                                                                                   ccGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAA                                                                                                                                                    >  2:85974‑M1/1‑149 (MQ=255)  cGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAc                                                                                                                                                   >  7:125769/1‑149 (MQ=255)      cATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCT‑GGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGt                                                                                                                                              <  6:79348/149‑1 (MQ=255)             ccGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTATTAGCGGGTAAaccccgtgcga                                                                                                                                         >  8:205025‑M1/1‑137 (MQ=255)              cGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACa                                                                                                                                       <  7:263958/149‑1 (MQ=255)              cGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTAGCCGGTTACCCCGGTccga                                                                                                                                         >  1:318354/1‑145 (MQ=255)                tgctgcACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGt                                                                                                                                     <  2:85751/149‑1 (MQ=255)                tgctgcACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGt                                                                                                                                     <  1:85974/149‑1 (MQ=255)                  ctgcACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTgg                                                                                                                                   <  6:45292/149‑1 (MQ=255)                  ctgcACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTgg                                                                                                                                   <  4:84753/149‑1 (MQ=255)                  ctgcACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTg                                                                                                                                    <  6:3829/148‑1 (MQ=255)                     cACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCg                                                                                                                                <  3:89131/149‑1 (MQ=255)                               gtgtGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATg                                                                                                                      <  1:90919/149‑1 (MQ=255)                                tgtgCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATgg                                                                                                                     >  2:61393/1‑149 (MQ=255)                                     tGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCgg                                                                                                                >  2:273259/1‑149 (MQ=255)                                           aaGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcg                                                                                                          <  8:125769/149‑1 (MQ=255)                                              gCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCcgtcg                                                                                                       >  2:63871/1‑149 (MQ=255)                                                 cGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAg                                                                                                    <  2:331190/149‑1 (MQ=255)                                                 cGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAg                                                                                                    <  6:287598/149‑1 (MQ=255)                                                      gAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaac                                                                                                <  6:70235‑M1/148‑53 (MQ=255)                                                       aGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCgg                                                                                              <  1:273259/149‑1 (MQ=255)                                                            gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTTACCCCGGTCCTACAGTGGGCGTGATGGCATGGGGGGGTTCCCGTCGTAGGAGCGGGGtta                                                                                         <  7:298119‑M2/149‑4 (MQ=255)                                                            gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCATCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtta                                                                                         <  7:15385‑M2/149‑4 (MQ=255)                                                                            gggTGGGCGCGGTGTAGCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTGCCCGTCGTAGGAGCGGGTttacccgcgaagaggccgg                                                                         >  7:205025‑M2/1‑130 (MQ=255)                                                                                  tCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaag                                                                                <  6:217598‑M1/136‑69 (MQ=255)                                                                                  tCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaag                                                                                >  5:217598‑M1/1‑68 (MQ=255)                                                                                    gAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCggcacaggca                                                                >  8:216784/1‑149 (MQ=255)                                                                                       gtgtATCTGGGCCTCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtt                                                                                          >  4:206144‑M2/1‑119 (MQ=255)                                                                                       gtgtATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTTACCCCGTTGCTACAGTGGGGGGTATGGCATGGGGCGGTTCCCGGGGGAGGGGCGGGGTTACCCGCGAAGAGG‑CCGgcacaggcacag                                                             >  7:293860/1‑149 (MQ=255)                                                                                       gtgtATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtt                                                                                          <  3:206144‑M2/121‑3 (MQ=255)                                                                                                 gCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTc                                                   <  1:63871/149‑1 (MQ=255)                                                                                                    gCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAgg                                                <  7:216784/149‑1 (MQ=255)                                                                                                              tttGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTcac                                       <  1:61393/149‑1 (MQ=255)                                                                                                                          gcgcCGGGGCCGGCCTCTTCGCGGGTAACCCGGTTCCTACAGTGGGCGTATTGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTAACCCGCTAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATc                           <  8:293860/148‑1 (MQ=39)                                                                                                                            gcCTGTGCCGGCTTCTTCGCGGTTAACCCCGTGCCTACAGTGGGCGTACTCCCTTGGGGCGGTTCCCGTCGTCGGAGCGGGTTTACCCGCTAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGac                        <  8:298119/149‑1 (MQ=255)                                                                                                                                   ccGGCCTCTTCGCGGGTAAacccgctcctacgacgggcaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagctacaccgcgcccaccc                  >  7:205025‑M1/1‑19 (MQ=255)                                                                                                                                        ctctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACAcc                     >  7:143103/1‑140 (MQ=255)                                                                                                                                        ctctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACAcc                     <  8:143103/140‑1 (MQ=255)                                                                                                                                         tctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAg            >  4:297332/1‑148 (MQ=255)                                                                                                                                          ctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcga                        <  6:217598‑M2/136‑69 (MQ=255)                                                                                                                                          ctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcga                        >  5:217598‑M2/1‑68 (MQ=255)                                                                                                                                           ctCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGt           <  8:15385/146‑1 (MQ=255)                                                                                                                                                 ggTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcggc   <  3:297332/149‑1 (MQ=255)                                                                                                                                                   tAAccccgctcctacgacgggaacccccccatgccatcacgcccactgtaggaccggggtaacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcac  <  7:298119‑M1/149‑147 (MQ=255)                                                                                                                                                   tAAacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgatgaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcac  <  7:15385‑M1/149‑147 (MQ=255)                                                                                                                                                    aaacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacac                             <  3:206144‑M1/121‑120 (MQ=255)                                                                                                                                                    aaacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagaggcccagatacac                             >  4:206144‑M1/1‑2 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCGACCATGTGACCGTGCTGCACCAGGGGAGTGTGCTGGCGGAAGGCTCGCTGGAGCAGGTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCG  >  NC_002947/5513119‑5513412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.