| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5513267 | 28 (0.520) | 3 (0.070) | 3/212 | NT | 11.2% | intergenic (+45/‑109) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein |
| ? | NC_002947 | = 5513323 | 25 (0.580) | intergenic (+101/‑53) | urtD/urtE | ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein | |||||
GTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAC > NC_002947/5513178‑5513464 | gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTTACCCCGGTCCTACAGTGGGCGTGATGGCATGGGGGGGTTCCCGTCGTAGGAGCGGGGtta < 7:298119‑M2/149‑4 (MQ=255)gTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCATCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtta < 7:15385‑M2/149‑4 (MQ=255) gggTGGGCGCGGTGTAGCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTGCCCGTCGTAGGAGCGGGTttacccgcgaagaggccgg > 7:205025‑M2/1‑130 (MQ=255) gAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCggcacaggca > 8:216784/1‑149 (MQ=255) gtgtATCTGGGCCTCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtt > 4:206144‑M2/1‑119 (MQ=255) gtgtATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTTACCCCGTTGCTACAGTGGGGGGTATGGCATGGGGCGGTTCCCGGGGGAGGGGCGGGGTTACCCGCGAAGAGG‑CCGgcacaggcacag > 7:293860/1‑149 (MQ=255) gtgtATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTtt < 3:206144‑M2/121‑3 (MQ=255) gCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTc < 1:63871/149‑1 (MQ=255) gCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAgg < 7:216784/149‑1 (MQ=255) tttGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTcac < 1:61393/149‑1 (MQ=255) gcgcCGGGGCCGGCCTCTTCGCGGGTAACCCGGTTCCTACAGTGGGCGTATTGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTAACCCGCTAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATc < 8:293860/148‑1 (MQ=39) gcCTGTGCCGGCTTCTTCGCGGTTAACCCCGTGCCTACAGTGGGCGTACTCCCTTGGGGCGGTTCCCGTCGTCGGAGCGGGTTTACCCGCTAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGac < 8:298119/149‑1 (MQ=255) ctctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACAcc < 8:143103/140‑1 (MQ=255) ctctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACAcc > 7:143103/1‑140 (MQ=255) tctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAg > 4:297332/1‑148 (MQ=255) ctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcga > 5:217598‑M2/1‑68 (MQ=255) ctTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcga < 6:217598‑M2/136‑69 (MQ=255) ctCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGt < 8:15385/146‑1 (MQ=255) ggTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcggc < 3:297332/149‑1 (MQ=255) cccGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGc > 7:201488/1‑149 (MQ=255) cccGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGc > 4:136719/1‑149 (MQ=255) cGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCca > 5:209970/1‑149 (MQ=255) gTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTttacccgcgaagaggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcacctgctc < 6:70235‑M2/148‑97 (MQ=255) ccTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGc < 7:117903/143‑1 (MQ=255) ccTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGc > 8:117903/1‑143 (MQ=255) cAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCt < 3:136719/147‑1 (MQ=255) tGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCAGCAGTACTACGGCGGCAGCGAGCTCCTGCGCGGCCTGTccg > 8:268398/1‑148 (MQ=255) tgtggCTGTTCACTTCTTAGTAGCGGTTATACCTGCTAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGaa < 7:233165/146‑1 (MQ=255) ggCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGt < 5:304066/105‑1 (MQ=255) ggCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGt > 6:304066/1‑105 (MQ=255) cGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCaa < 3:274502/149‑1 (MQ=255) cgtcgtAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGc > 1:222464/1‑149 (MQ=255) gtcgtAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGc > 3:28033/1‑148 (MQ=255) gtAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGaa < 8:201488/148‑1 (MQ=255) tcgcacggggtttacccgctaataggccggcacaggcgccaaaaattcaaatccggtcagcggcccagatacacctcgaccacccgctcatctgcctgcacctgctccagcgagccttccgccagcacactcccctggtgcagcacgg > 8:205025‑M2/8‑11 (MQ=255) gAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAc < 6:209970/149‑1 (MQ=255) | GTGCAGGCAGATGAGCGGGTGGTCGAGGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGG‑CCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAC > NC_002947/5513178‑5513464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |