New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5890484 =	60 (1.110)	3 (0.060)	3/250	NT	5.7%	coding (2139/2367 nt)	PP_5164	penicillin amidase family protein
	?	NC_002947	5890539 =	42 (0.820)					coding (2194/2367 nt)	PP_5164	penicillin amidase family protein

CATACCCCTCGGCCTGGTCCGCGTAATGCCGGTCGAACGGCACGCCACTCTGCCCGACCGGGTTGATGGTCAGCGCCTGCCCGGCATCGGCAAAGTCGATCAGCCGCCGCGTCGACGGCCCATAGGTCACCGGCCATGGCGCAGAGCTGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5890635‑5890484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgatcGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCGGCGCAAA  >  NC_002947/5890539‑5890683                                                                                                                                                                                                                                                                                                           CATACCCCTCGGCCTGGTCCGCGTAATGCCGGTCGAACGGCACGCCACTCTGCCCGACCGGGTTGATGGTCAGCGCCTGCCCGGCATCGGCAAAGTCGATCAGCCGCCGCGTCGACGGCCCATAGGTCACCGGCCATGGCGCAGAGCTG                                                                                                                                                      <  1:252408/149‑1    ACCCCTCGGCCTGGTCCGCGTAATGCCGGTCGAACGGCACGCCACTCTGCCCGACCGGGTTGATGGTCAGCGCCTGCCCGGCATCGGCAAAGTCGATCAGCCGCCGCGTCGACGGCCCATAGGTCACCGGCCATGGCGCAGAGCTGATC                                                                                                                                                   >  5:3472/1‑149                                                                                          GCAAAGTCGATCAGCCGCCGCGTCGACGGCCCATAGGTCACCGGCCATGGCGCAGAGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGC                                                             >  5:50527/1‑149                                                                                            AAAGTCGATCAGCCGCCGCGTCGACGGCCCATAGGTCACCGGCCATGGCGCAGAGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCC                                                            >  8:17663/1‑148                                                                                                  GATCAGCCGCCGCGTCGACGGCCCATAGGTCACCGGCCATGGCGCAGAGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGT                                                     <  6:50527/149‑1                                                                                                                                                  GCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCGGCG      >  1:7645/1‑148                                                                                                                                                     GATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTTTGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCGGCGCAAA  <  8:131743/149‑1                                                                                                                                                                                                                                                                                                           CATACCCCTCGGCCTGGTCCGCGTAATGCCGGTCGAACGGCACGCCACTCTGCCCGACCGGGTTGATGGTCAGCGCCTGCCCGGCATCGGCAAAGTCGATCAGCCGCCGCGTCGACGGCCCATAGGTCACCGGCCATGGCGCAGAGCTGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5890635‑5890484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgatcGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCGGCGCAAA  >  NC_002947/5890539‑5890683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.