New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5890484 =	60 (1.110)	3 (0.060)	3/250	NT	5.7%	coding (2139/2367 nt)	PP_5164	penicillin amidase family protein
	?	NC_002947	5890539 =	42 (0.820)					coding (2194/2367 nt)	PP_5164	penicillin amidase family protein

GGTGAAAAAGCCGCTGAACCTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCGGCGCAAA  >  NC_002947/5890397‑5890683                                                                                                                                               |                                                                                                                                                 ggcctggtccgcgtaatgccggtcgaacggcacgccactctgcccgaccgggttgatggtcagcgcctgcccggcatcggcaaagtcGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACttt                                                                                                                                             >  8:17663‑M1/88‑148 (MQ=255) ggTGAAAAAGCCGCTGAACCTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTg                                                                                                                                            <  2:285685/149‑1 (MQ=255)  gcctggtccgcgtaatgccggtcgaacggcacgccactctgcccgaccgggttgatggtcagcgcctgcccggcatcggcaaagtcGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGc                                                                                                                                           >  5:50527‑M1/87‑149 (MQ=255)   tGAAAAAGCCGCTGAACCTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGcc                                                                                                                                          >  3:76541/1‑149 (MQ=255)     aaaaaGCCGCTGAACCTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGa                                                                                                                                        >  6:298542/1‑149 (MQ=255)       aaaGCCGCTGAACCTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATg                                                                                                                                      >  6:3472/1‑149 (MQ=255)                  aCCTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGgcg                                                                                                                           >  5:12469/1‑149 (MQ=255)                   ccTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGgcgc                                                                                                                          >  8:93575/1‑149 (MQ=255)                   ccTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGgcgc                                                                                                                          >  8:158307/1‑149 (MQ=255)                       aggTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGAc                                                                                                                      <  1:186254/147‑1 (MQ=255)                        tgTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGAc                                                                                                                      >  6:155829/1‑148 (MQ=255)                          ttCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCgg                                                                                                                                  >  6:237549/1‑134 (MQ=255)                          ttCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCAt                                                                                                                   <  2:242410/149‑1 (MQ=255)                            cAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATc                                                                                                                  <  5:155829/148‑1 (MQ=255)                            cAACGTTGGGCCATTCGACGCACCCGGTACCAATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATc                                                                                                                  >  4:185612/1‑148 (MQ=255)                             aaCGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCaa                                                                                                                <  3:185612/149‑1 (MQ=255)                               cGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAAcc                                                                                                              <  2:130433/149‑1 (MQ=255)                                gTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAAccc                                                                                                             >  7:131743/1‑149 (MQ=255)                                gTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACACGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAAccc                                                                                                             >  1:113762/1‑149 (MQ=255)                                    ggCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTc                                                                                                         <  2:121053/149‑1 (MQ=255)                                     gCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCg                                                                                                        >  6:126618/1‑149 (MQ=255)                                               gcACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTgg                                                                                              >  3:319915/1‑149 (MQ=255)                                                       tACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGt                                                                                      <  4:226546/149‑1 (MQ=255)                                                         cccATGAAGTGCCGAACAACCTCTCGGCGAAGAGCAGCTCTGCGCCAGGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGtt                                                                                     <  6:152496/148‑1 (MQ=255)                                                              gAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCg                                                                               >  4:70242/1‑149 (MQ=255)                                                                    ccGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGc                                                                             <  6:49897/145‑1 (MQ=255)                                                                    ccGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGc                                                                             >  5:49897/1‑145 (MQ=255)                                                                    ccGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCAtt                                                                          <  4:45587/148‑1 (MQ=255)                                                                        acaacGTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTAcgcg                                                                     <  3:298772/149‑1 (MQ=255)                                                                        acaacCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCaga                                                                                                  >  4:229784/1‑120 (MQ=255)                                                                        acaacCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCaga                                                                                                  <  3:229784/120‑1 (MQ=255)                                                                        acaacCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTAcgcg                                                                     <  4:157371/149‑1 (MQ=255)                                                                                gcaaagtcgatcagccgccgcgtcgacggcccataggtcaccggccatggcgcagagctgatcGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGc                                                             >  5:50527‑M2/64‑149 (MQ=255)                                                                                  ggCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGc                                                             <  7:158307/147‑1 (MQ=255)                                                                                  aaagtcgatcagccgccgcgtcgacggcccataggtcaccggccatggcgcagagctgatcGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGcc                                                            >  8:17663‑M2/62‑148 (MQ=255)                                                                                        gatcagccgccgcgtcgacggcccataggtcaccggccatggcgcagagctgatcGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGt                                                     <  6:50527‑M2/94‑1 (MQ=255)                                                                                        GATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGt                                                     >  5:3472‑M1/1‑149 (MQ=255)                                                                                           CAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTAtg                                                  <  1:252408‑M1/149‑1 (MQ=255)                                                                                                   cgcCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAg                                             <  3:70242/146‑1 (MQ=255)                                                                                                         ggCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAggg                                                       <  7:105150/130‑1 (MQ=255)                                                                                                         ggCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAggg                                                       >  8:105150/1‑130 (MQ=255)                                                                                                            cGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAg                                 <  2:252408/149‑1 (MQ=255)                                                                                                                   cTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGgcg                           >  2:155373/1‑148 (MQ=255)                                                                                                                     aTGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGTGGgcg                           >  7:179426/1‑146 (MQ=255)                                                                                                                     aTGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGTGGgcg                           <  8:179426/146‑1 (MQ=255)                                                                                                                        ggCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATg                     >  1:331674/1‑149 (MQ=255)                                                                                                                             tCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGt                <  6:12469/149‑1 (MQ=255)                                                                                                                             tCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGt                <  1:155373/149‑1 (MQ=255)                                                                                                                                  gcggcgGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTc           <  5:126618/149‑1 (MQ=255)                                                                                                                                     gcggcTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCgg        <  7:93575/149‑1 (MQ=255)                                                                                                                                     gcggcTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCgg        <  5:298542/149‑1 (MQ=255)                                                                                                                                        gctgatcGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCGgcg      >  1:7645‑M2/8‑148 (MQ=255)                                                                                                                                           gatcGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTTTGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCGGCGCaaa  <  8:131743‑M2/145‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 GGTGAAAAAGCCGCTGAACCTGCTGTTCAACGTTGGGCCATTCGCCGCACCCGGTACCCATGAAGTGCCGAACAACCTCTCGGCGAAGATCAGCTCTGCGCCATGGCCGGTGACCTATGGGCCGTCGACGCGGCGGCTGATCGACTTTGCCGATGCCGGGCAGGCGCTGACCATCAACCCGGTCGGGCAGAGTGGCGTGCCGTTCGACCGGCATTACGCGGACCAGGCCGAGGGGTATGTGCAGGGGCAGTATCAGCGGGCGCAGATGGGGGTGATTCCGGCGCAAA  >  NC_002947/5890397‑5890683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.