New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5920986	69 (1.280)	5 (0.100)	5/252	NT	7.4%	coding (1572/1674 nt)	PP_5190	type II secretion system protein
	?	NC_002947	= 5921015	59 (1.150)					coding (1601/1674 nt)	PP_5190	type II secretion system protein

TGCACCGACTGCCAGACAGGTTCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5920834‑5920986 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcAGGTCAACCAGGCCATCGGCCAGCGCCTGGCGCCGCAAACAGGTCAGGTCGGCATCAGGGCCGATCAATGCGCGCAAGGTGTCGCTGGGCTCGAGCAGTTCGAATAATCCCGTGCGCCCCTGAAAACCGGTGCCGCGGCAGGCTCG  <  NC_002947/5921015‑5920870                                                                                                                                                                                                                                                                                                             TGCACCGACTGCCAGACAGGTTCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCG                                                                                                                                                        >  4:164730/1‑149  GCACCGACTGCCAGACAGGTTCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGG                                                                                                                                                       >  5:182749/1‑149   CACCGACTGCCAGACAGGTTCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCTGACCTGACCTGTTTGCGG                                                                                                                                                       <  8:49847/148‑1   CACCGACTGCCAGACAGGTTCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGC                                                                                                                                                         <  8:193196/146‑1    ACCGACTGCCAGACAGGTTCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCG                                                                                                                                                     >  7:78841/1‑149            CCAGACAGGTTCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGCAGGTCAA                                                                                                                                             >  6:204855/1‑149                         TCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGCAGGTCAACCAGGCCATCGGC                                                                                                                                >  3:277723/1‑149                                        GCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGCAGGTCAACCAGGCCATCGGCCAGCGCCTGGCGCCG                                                                                                                 <  4:277723/149‑1                                             CCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGCAGGTCAACCAGGCCATCGGCCAGCGCCTGGCGCCGCAA                                                                                                              <  5:204855/147‑1                                                 GGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGCAGGTCAACCAGGCCATCGGCCAGCGCCTGGCGCCTCAAACAGGT                                                                                                        <  6:257108/149‑1                                                                                                                                                      GCGCAGGTCAACCAGGCCATCGGCCAGCGCCTGGCGCCGCAAACAGGTCAGGTCGGCATCAGGGCCGATCAATGCGCGCAAGGTGTCGCTGGGCTCGAGCAGTTCGAATAATCCCGTGCGCCCCTGAAAACCGGTGCCGCGGAAGGCTC   >  2:94346/1‑149                                                                                                                                                       CGCAGGTCAACCAGGCCATCGGCCAGCGCCTGGCGCCGCAAACAGGTCAGGTCGGCATCAGGGCCGATCAATGCGCGCAAGGTGTCGCTGGGCTCGAGCAGTTCGAATAATCCCGTGCGCCCCTGAAAACCGGTGCCGCGGCAGGCTCG  <  1:59574/149‑1                                                                                                                                                                                                                                                                                                             TGCACCGACTGCCAGACAGGTTCATCAGCCACCTGCCGAGCCTGCCGCGGCACCGGTTTTCAGGGGCGCACGGGATTATTCGAACTGCTCGAGCCCAGCGACACCTTGCGCGCATTGATCGGCCCTGATGCCGACCTGACCTGTTTGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5920834‑5920986 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcAGGTCAACCAGGCCATCGGCCAGCGCCTGGCGCCGCAAACAGGTCAGGTCGGCATCAGGGCCGATCAATGCGCGCAAGGTGTCGCTGGGCTCGAGCAGTTCGAATAATCCCGTGCGCCCCTGAAAACCGGTGCCGCGGCAGGCTCG  <  NC_002947/5921015‑5920870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.