New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1410949 =	46 (0.850)	3 (0.060)	3/248	NT	6.5%	coding (986/1437 nt)	PP_1232	hypothetical protein
	?	NC_002947	1411020 =	43 (0.850)					coding (915/1437 nt)	PP_1232	hypothetical protein

ACCAGCAGGTCGGCACGCACCTGTTTCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGT  >  NC_002947/1410802‑1411095                                                                                                                                                     |                                                                                                                                                   aCCAGCAGGTCGGCACGCACCTGTTTCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGgcgc                                                                                                                                                   <  7:277961/149‑1 (MQ=255) aCCAGCAGGTCGGCACGCACCTGTTTCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGgcgc                                                                                                                                                   >  5:180003/1‑149 (MQ=255)  aagggtggcattgaagacagcatgcgctaccaactgatccgcgcccgggtggcactgatctacgagggcacaccggggcttgccgccaagcgcttccgcgcccaactggacgaagacccaaagctggacgccgcacgttatggcctggc                                                                                                                                                   >  3:281154‑M1/148‑149 (MQ=255)           cGGCACGCACCTGTTTCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCcagc                                                                                                                                         <  5:100445/149‑1 (MQ=255)                  cacCTGTTTCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCt                                                                                                                                  <  2:117389/149‑1 (MQ=255)                   acCTGTTTCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCtt                                                                                                                                 <  2:116627/149‑1 (MQ=255)                     cTGTTTGAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGa                                                                                                                               <  3:292056/149‑1 (MQ=255)                     cTGTTTCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGa                                                                                                                               <  3:174659/149‑1 (MQ=255)                         ttCATCGGGTAGTTGCCCGGGTACAGCGCCTGCATGCGTTCGGCGCGGTGCTGGGCGTCGGCAAGTCGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTTGGTGATGGCGTTGGGCGCCTTGGCGAGCAGCGGCTTGAGCa                                                                                                                            <  8:199361/148‑1 (MQ=255)                          tCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCAtt                                                                                                                          >  4:142129/1‑149 (MQ=255)                           cAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCAttt                                                                                                                         >  8:94436/1‑149 (MQ=255)                            aaCGGGTAGTTGCCCGGGTACTGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGGTTGAGCATTTc                                                                                                                        <  4:107139/149‑1 (MQ=255)                                ggTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACgg                                                                                                                    <  6:82771/149‑1 (MQ=255)                                       gCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACgg                                                                                                                    <  5:153639/142‑1 (MQ=255)                                       gCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACgg                                                                                                                    >  6:153639/1‑142 (MQ=255)                                        cccGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGt                                                                                                             <  2:188700/148‑1 (MQ=255)                                                       tGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGc                                                                                                                                             <  2:35558/101‑1 (MQ=255)                                                       tGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGc                                                                                                                                             >  1:35558/1‑101 (MQ=255)                                                       actgatctacgagggcacaccggggcttgccgccaagcgcttccgcgcccaactggacgaagacccaaagctggacgccgcacgttatggcctgGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCt                                                                                              <  6:311994‑M1/55‑1 (MQ=255)                                                        gCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGATGGTCCAGGTCGATCTGTGGCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCtt                                                                                             >  1:80467/1‑149 (MQ=255)                                                        gCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCtt                                                                                             >  2:41454/1‑148 (MQ=255)                                                         cATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGa                                                                                           <  7:94436/149‑1 (MQ=255)                                                               ttCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCtgtg                                                                                     >  6:213428/1‑149 (MQ=255)                                                                 cGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGc                                                                                    <  5:213428/148‑1 (MQ=255)                                                                     gcacaccggggcttgccgccaagcgcttccgcgcccaactggacgaagacccaaagctggacgccgcacgttatggcctgGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAag                                                                                >  2:30828‑M1/81‑149 (MQ=255)                                                                         tgctgGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAaggccag                                                                           >  5:49001/1‑149 (MQ=255)                                                                          ccggggcttgccgccaagcgcttccgcgcccaactggacgaagacccaaagctggacgccgcacgttatggcctgGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAaggccag                                                                           >  5:311994‑M1/76‑149 (MQ=255)                                                                            tgGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAaggccaggc                                                                         >  1:204853/1‑148 (MQ=255)                                                                                     gCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTgc                                                               <  3:142129/149‑1 (MQ=255)                                                                                      cAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTgcg                                                              <  6:180003/149‑1 (MQ=255)                                                                                       aaGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGACCGACCTTGACCTGTGCCAAGGCAAGGCCATAACGTgcgg                                                             >  8:88712/1‑149 (MQ=255)                                                                                                  tgGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCttt                                                  >  4:277652/1‑149 (MQ=255)                                                                                                    gTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTgg                                                <  2:204853/149‑1 (MQ=255)                                                                                                           tCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTc                                          <  1:41454/149‑1 (MQ=255)                                                                                                             cAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGt                                        >  3:10660/1‑149 (MQ=255)                                                                                                             cAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGt                                        >  2:103636/1‑149 (MQ=255)                                                                                                             cAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGt                                        >  4:100228/1‑149 (MQ=255)                                                                                                              aGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCTCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTc                                       >  3:94967/1‑149 (MQ=255)                                                                                                                  cGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTgcccg                                                                                                  >  7:60395/1‑86 (MQ=255)                                                                                                                  cGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTgcccg                                                                                                  <  8:60395/86‑1 (MQ=255)                                                                                                                   gATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGTCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTGTGGGTCTTCGTCCAGtt                                  >  6:9699/1‑149 (MQ=255)                                                                                                                     tCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTgg                                >  1:33351/1‑149 (MQ=255)                                                                                                                            cAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCgg                          >  4:290704/1‑148 (MQ=255)                                                                                                                             aaGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGaa                        <  7:88712/149‑1 (MQ=255)                                                                                                                             aaGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGaa                        <  3:100228/149‑1 (MQ=255)                                                                                                                                ttGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAgcg                     <  3:290704/149‑1 (MQ=255)                                                                                                                                   tAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGTCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCtt                  <  2:80467/149‑1 (MQ=255)                                                                                                                                     ggTGATGTCGTTGGGCTCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTg                 <  4:94967/148‑1 (MQ=255)                                                                                                                                       tGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTgg                                >  4:156854/1‑131 (MQ=255)                                                                                                                                       tGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTgg                                <  3:156854/131‑1 (MQ=255)                                                                                                                                          tGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTggcggc            >  7:17105/1‑148 (MQ=255)                                                                                                                                              gTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGCGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGcc       >  5:294159/1‑149 (MQ=255)                                                                                                                                                  ggCGCCTTGGCCAGCAGCGGCTTGATCATTTCCCGGGCCGCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCGTTGGGTCTTCGTCCAGTTGGGCGCGTAAGCGCTTGGCGGCAAGCCCCg    <  6:294159/148‑1 (MQ=255)                                                                                                                                                  ggCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCg    <  3:277652/148‑1 (MQ=255)                                                                                                                                                   gcgcCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGgt  >  7:174225/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACCAGCAGGTCGGCACGCACCTGTTTCAACGGGTAGTTGCCCGGGTACAGCCCCTGCATCCGTTCGGCGCGCTGCTGGGCGTCGGCAAGACGGTTGTTGGTGAT‑GTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGT  >  NC_002947/1410802‑1411095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.