New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1410949 =46 (0.850)3 (0.060) 3/248 NT 6.5% coding (986/1437 nt) PP_1232 hypothetical protein
?NC_002947 1411020 = 43 (0.850)coding (915/1437 nt) PP_1232 hypothetical protein

TGCTGGGCGTCGGCAAGACGGTTGTTGGTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCTTCAATGCCACCCTTGG  >  NC_002947/1410874‑1411168
                                                                                                                                                  |                                                                                                                                                    
tgctgGGCGTCGGCAAGACGGTTGTTGGTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAaggccag                                                                                                                                                    >  5:49001/1‑149 (MQ=255)
ccggggcttgccgccaagcgcttccgcgcccaactggacgaagacccaaagctggacgccgcacgttatggcctgGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAaggccag                                                                                                                                                    >  5:311994‑M1/76‑149 (MQ=255)
   tgGGCGTCGGCAAGACGGTTGTTGGTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAaggccaggc                                                                                                                                                  >  1:204853/1‑148 (MQ=255)
            gCAAGACGGTTGTTGGTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTgc                                                                                                                                        <  3:142129/149‑1 (MQ=255)
             cAAGACGGTTGTTGGTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTgcg                                                                                                                                       <  6:180003/149‑1 (MQ=255)
              aaGACGGTTGTTGGTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGACCGACCTTGACCTGTGCCAAGGCAAGGCCATAACGTgcgg                                                                                                                                      >  8:88712/1‑149 (MQ=255)
                         tgGTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCttt                                                                                                                           >  4:277652/1‑149 (MQ=255)
                           gTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTgg                                                                                                                         <  2:204853/149‑1 (MQ=255)
                                 tCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTc                                                                                                                   <  1:41454/149‑1 (MQ=255)
                                   cAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGt                                                                                                                 >  4:100228/1‑149 (MQ=255)
                                   cAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGt                                                                                                                 >  3:10660/1‑149 (MQ=255)
                                   cAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGt                                                                                                                 >  2:103636/1‑149 (MQ=255)
                                    aGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCTCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTc                                                                                                                >  3:94967/1‑149 (MQ=255)
                                         gATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGTCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTGTGGGTCTTCGTCCAGtt                                                                                                           >  6:9699/1‑149 (MQ=255)
                                           tCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTgg                                                                                                         >  1:33351/1‑149 (MQ=255)
                                                  cAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCgg                                                                                                   >  4:290704/1‑148 (MQ=255)
                                                   aaGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGaa                                                                                                 <  7:88712/149‑1 (MQ=255)
                                                   aaGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGaa                                                                                                 <  3:100228/149‑1 (MQ=255)
                                                      ttGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAgcg                                                                                              <  3:290704/149‑1 (MQ=255)
                                                         tAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGTCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCtt                                                                                           <  2:80467/149‑1 (MQ=255)
                                                           ggTGATGTCGTTGGGCTCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTg                                                                                          <  4:94967/148‑1 (MQ=255)
                                                             tGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTgg                                                                                                         >  4:156854/1‑131 (MQ=255)
                                                             tGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTgg                                                                                                         <  3:156854/131‑1 (MQ=255)
                                                                tGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTggcggc                                                                                     >  7:17105/1‑148 (MQ=255)
                                                                    gTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGCGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGcc                                                                                >  5:294159/1‑149 (MQ=255)
                                                                        ggCGCCTTGGCCAGCAGCGGCTTGATCATTTCCCGGGCCGCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCGTTGGGTCTTCGTCCAGTTGGGCGCGTAAGCGCTTGGCGGCAAGCCCCg                                                                             <  6:294159/148‑1 (MQ=255)
                                                                        ggCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCg                                                                             <  3:277652/148‑1 (MQ=255)
                                                                        ctggccttggcacaggtcaagggcgggcaattgaacgaggcccgtgaaatgctcaagccgctgctggccaaggcCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCgg                                                                            >  5:311994‑M2/75‑149 (MQ=255)
                                                                         gcgcCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGgt                                                                           >  7:174225/1‑149 (MQ=255)
                                                                             cttggcacaggtcaagggcgggcaattgaacgaggcccgtgaaatgctcaagccgctgctggccaaggcCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGc                                                                       >  2:30828‑M2/70‑149 (MQ=255)
                                                                                 GCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCt                                                                    >  2:33351‑M1/1‑148 (MQ=255)
                                                                                   cagcagCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCg                                                                  >  4:11703/1‑148 (MQ=255)
                                                                                           agggcgggcaattgaacgaggcccgtgaaatgctcaagccgctgctggccaaggcCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGt                                                         <  6:311994‑M2/94‑1 (MQ=255)
                                                                                            cTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTg                                                        <  8:174225/149‑1 (MQ=255)
                                                                                             ttGAGCATTTCACGGGCCTCGTACAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGCCGTCCAGCTTTGGGTCTTCGTCCAGTTGCGCGCGGAACCCCTTGGCGGCAAGCCCCGGTGTGCCCTCCTAGATCAGTGc                                                       >  3:92028/1‑149 (MQ=255)
                                                                                                 gCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCAcc                                                   >  1:260822/1‑149 (MQ=255)
                                                                                                       cACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGgcg                                             >  4:268762/1‑149 (MQ=255)
                                                                                                          gggCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGcgcg                                           >  1:100361/1‑148 (MQ=255)
                                                                                                               tCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAg                                     >  3:36657/1‑149 (MQ=255)
                                                                                                                cGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGt                                    >  3:260470/1‑149 (MQ=255)
                                                                                                                    cAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTgg                                 >  3:295963/1‑148 (MQ=255)
                                                                                                                     aaTTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTc                                                                                                                   >  1:109532/1‑65 (MQ=255)
                                                                                                                     aaTTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTc                                                                                                                   <  2:109532/65‑1 (MQ=255)
                                                                                                                     aaTTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTgg                                 >  5:18313/1‑147 (MQ=255)
                                                                                                                          cccgcccTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAgcgc                           <  2:260822/148‑1 (MQ=255)
                                                                                                                          cccgcccTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAgcgc                           <  8:17105/148‑1 (MQ=255)
                                                                                                                            cgcccTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGa                                         <  1:174375/132‑1 (MQ=255)
                                                                                                                            cgcccTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGa                                         >  2:174375/1‑132 (MQ=255)
                                                                                                                              cccTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCt                      >  4:276753/1‑149 (MQ=255)
                                                                                                                                    aCCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCtt                 >  7:171585/1‑148 (MQ=255)
                                                                                                                                         tgCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCTTCAAt             <  6:18313/147‑1 (MQ=255)
                                                                                                                                         tgCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCTTCAAt             <  6:49001/147‑1 (MQ=255)
                                                                                                                                         tgCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCTTCAAt             <  3:11703/147‑1 (MQ=255)
                                                                                                                                           ccAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCTTCAATGCCA         >  8:242885‑M1/1‑149 (MQ=255)
                                                                                                                                                gcCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCTTCAATGCCACCCtt    >  3:281154‑M2/3‑149 (MQ=255)
                                                                                                                                                  caggccaTAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCTTCAATGCCACCCTTgg  >  6:141778/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
TGCTGGGCGTCGGCAAGACGGTTGTTGGTGATGTCCAGGTCGATCTGTGCCAAGTTGTAGGTGATGTCGTTGGGCGCCTTGGCCAGCAGCGGCTTGAGCATTTCACGGGCCTCGTTCAATTGCCCGCCCTTGACCTGTGCCAAGGCCAGGCCATAACGTGCGGCGTCCAGCTTTGGGTCTTCGTCCAGTTGGGCGCGGAAGCGCTTGGCGGCAAGCCCCGGTGTGCCCTCGTAGATCAGTGCCACCCGGGCGCGGATCAGTTGGTAGCGCATGCTGTCTTCAATGCCACCCTTGG  >  NC_002947/1410874‑1411168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.