New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1775743	33 (0.610)	3 (0.060)	3/248	NT	8.7%	coding (923/1077 nt)	PP_1582	hypothetical protein
	?	NC_002947	= 1775769	32 (0.630)					coding (949/1077 nt)	PP_1582	hypothetical protein

CCAGCGCCTGCCGGCGGCGCCAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACCTGCTGCAGCGATGACCAGTATCCAGTGGAAC  >  NC_002947/1775598‑1775888                                                                                                                                                  |                                                                                                                                                  ccAGCGCCTGCCGGCGGCGCCAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGaa                                                                                                                                                 <  2:96644/148‑1 (MQ=255) ccAGCGCCTGCCGGCGGCGCCAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAg                                                                                                                                                >  8:132861/1‑149 (MQ=255)   aGCGCCTGCCGGCGGCGCCAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGcaata                                                                                                                                              >  3:237429‑M1/1‑144 (MQ=255)        cTGCCGGCGGCGCCAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGt                                                                                                                                          >  3:82920/1‑148 (MQ=255)         tGCCGGCGGCGCCAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTc                                                                                                                                         >  2:186714/1‑148 (MQ=255)            cggcggCGCCAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGt                                                                                                                                     <  7:132861/149‑1 (MQ=255)                    ccAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGt                                                                                                                             <  5:215235/149‑1 (MQ=255)                            cGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGATGCGTGGTCAAGTTTGCCGGTATTGcc                                                                                                                       <  4:223077‑M2/147‑3 (MQ=255)                               aaTGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGcaataccggcaaacttgaccacgcttcccaggc                                                                                                                  <  4:237429‑M1/149‑34 (MQ=255)                                   ccGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGcaataccggcaaacttgaccacgcttcccaggccaa                                                                                                               <  3:116122‑M1/148‑37 (MQ=255)                                   ccGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGgccgc                                                                                                               <  4:108022/148‑1 (MQ=255)                                    cGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGcaataccggcaaacttgaccacgcttcccaggccaaga                                                                                                             <  1:151889‑M1/149‑39 (MQ=255)                                     gCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCaa                                                                                                            <  8:202742/149‑1 (MQ=255)                                     gCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCaa                                                                                                            <  1:248394/149‑1 (MQ=255)                                     gCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCaa                                                                                                            >  6:128465/1‑149 (MQ=255)                                       aCTTGTCCCGTATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATg                                                                                                          <  5:4263/149‑1 (MQ=255)                                        cTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATgg                                                                                                         <  5:294611/149‑1 (MQ=255)                                            tCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGaa                                                                                                     <  1:96191/149‑1 (MQ=255)                                                      gCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCg                                                                                           >  1:166642/1‑149 (MQ=255)                                                               cttcGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATg                                                                                  >  1:137120/1‑149 (MQ=255)                                                                    gaccTTCAACCTACGACCGCCTAGTTTTGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCg                                                                                                                               <  2:173782/97‑1 (MQ=255)                                                                    gTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAAt                                                                             <  1:199153/149‑1 (MQ=255)                                                                               tACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTgg                                                                  >  5:35409/1‑149 (MQ=255)                                                                                 cGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGGCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGc                                                                 <  8:78697/148‑1 (MQ=255)                                                                                           ggTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAgg                                                       <  4:296177/148‑1 (MQ=255)                                                                                            gTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCt                                                     >  7:309014/1‑149 (MQ=255)                                                                                             ttGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTg                                                    <  2:166642/149‑1 (MQ=255)                                                                                                 tACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTc                                                <  5:128465/149‑1 (MQ=255)                                                                                                 tACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTc                                                <  1:186714/149‑1 (MQ=255)                                                                                                 tACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTc                                                <  3:223077/149‑1 (MQ=255)                                                                                                         ggCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTg                                        >  8:214229/1‑149 (MQ=255)                                                                                                               cgacTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGTGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTAc                                  >  4:307945/1‑149 (MQ=255)                                                                                                                gacTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTAc                                  >  4:271206/1‑148 (MQ=255)                                                                                                                   tctTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACctgc                              >  1:171590/1‑149 (MQ=255)                                                                                                                              gggCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACCTGCTGCAGCGATGa                   >  3:133566/1‑149 (MQ=255)                                                                                                                               ggCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACCTGCTGCAGCGATGAc                  >  4:121840/1‑149 (MQ=255)                                                                                                                                      ctctTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACCTGCTGCAGCGATGACCAGTATc           <  4:82920/149‑1 (MQ=255)                                                                                                                                       tctTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGcccaggccaagaggatcgccctcttcataagagtcggtcgccgggttgtaccaacctaggcggtcgtaggttgaaggaccgaagaacacccgcccatccgggacaagtgcg          <  1:151889‑M2/149‑112 (MQ=255)                                                                                                                                       tctTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACCTGCTGCAGCGATGACCAGTATc           >  7:26845/1‑148 (MQ=255)                                                                                                                                         ttGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGcccaggccaagaggatcgccctcttcataagagtcggtcgccgggttgtaccaacctaggcggtcgtaggttgaaggaccgaagaacacccgcccatccgggacaagtgcgg         <  3:116122‑M2/148‑113 (MQ=255)                                                                                                                                         ttGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACCTGCTGCAGCGATGACCAGTATCCAg        >  4:238346/1‑149 (MQ=255)                                                                                                                                           ggCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACCTGCTGCAGCGATGACCAGTATCCAGt       <  7:214229/148‑1 (MQ=255)                                                                                                                                            gCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGcccaggccaagaggatcgccctcttcataagagtcggtcgccgggttgtaccaacctaggcggtcgtaggttgaaggaccgaagaacacccgcccatccgggacaagtgcggcatt     <  4:237429‑M2/149‑117 (MQ=255)                                                                                                                                                 ggcaataccggcaaacttgaccacgcatcccaggccaagaggatcgccctcttcataagagtcggtcgccgggttgtaccaacctaggcggtcgtaggttgaaggaccgaagaacacccgcccatccgggacaagtgcggcatttcg  <  4:223077‑M1/147‑146 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CCAGCGCCTGCCGGCGGCGCCAAGTTCCGAAATGCCGCACTTGTCCCGGATGGGCGGGTGTTCTTCGGTCCTTCAACCTACGACCGCCTAGGTTGGTACAACCCGGCGACCGACTCTTATGAAGAGGGCGATCCTCTTGGCCTGGGAAGCGTGGTCAAGTTTGCCGGTATTGCCCAGGCCGCCAATGGAGAACTGATCCTCGCCCCCCATGTAAATGAGGCGGTTGGCCGCATCAAGGCTGTTTCCGCTGGTGCGCTACCTGCTGCAGCGATGACCAGTATCCAGTGGAAC  >  NC_002947/1775598‑1775888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.