New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2816560 =	42 (0.780)	5 (0.100)	4/256	NT	10.6%	coding (28/357 nt)	PP_2472	MerR family transcriptional regulator
	?	NC_002947	2816653 =	44 (0.840)					coding (121/357 nt)	PP_2472	MerR family transcriptional regulator

TTCGCGACAAACGCCAGCGGCCGGGCCGTAACCCCAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTAC  >  NC_002947/2816413‑2816703                                                                                                                                                    |                                                                                                                                                atcactggagagcctcaaccgcgccccgccaatggtgaacccctggtcatacagcagcgcacgaatctggcggatcatcagcacatcctggcgctggtaataccgccggttcccccgccgcttcacagggttcagctggtcgaactcCt                                                                                                                                                >  1:95053‑M1/148‑149 (MQ=255)    actggagagcctcaaccgcgccccgccaatggtgaacccctggtcatacagcagcgcacgaatctggcggatcatcagcacatcctggcgctggtaataccgccggttcccccgccgcttcacagggttcagctggtcgaactcCTGc                                                                                                                                              >  5:164705‑M1/145‑148 (MQ=255)     cgACAAACGCCAGCGGCCGGGCCGTAACCCCAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGccc                                                                                                                                            >  8:15271/1‑149 (MQ=255)        cAAACGCCAGCGGCCGGGCCGTAACCCCAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGcccccc                                                                                                                                         <  8:213372/149‑1 (MQ=255)            cGCCAGCGACCGGGCCGTAACCCCAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATAc                                                                                                                                     <  4:99478/149‑1 (MQ=255)               cAGCGGCCGGGCCGTAACCCCAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCgg                                                                                                                                  >  7:77429/1‑149 (MQ=255)               cAGCGGCCGGGCCGTAACCCCAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCgg                                                                                                                                  <  7:63857/149‑1 (MQ=255)                   ggccgggccgTAACCCAAAGACACGGCAAGACATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAAGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCaa                                                                                                                              <  4:107636/149‑1 (MQ=255)                         gccgTAACCCCAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTa                                                                                                                        <  3:138736/149‑1 (MQ=255)                                ccccAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCAc                                                                                                                  >  6:194787/1‑148 (MQ=255)                                    aaGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTg                                                                                                             <  5:328037/149‑1 (MQ=255)                                           gggAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGt                                                                                                      <  3:118497/149‑1 (MQ=255)                                             gAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGGTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGa                                                                                                    <  7:15271/149‑1 (MQ=255)                                                   aTCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAg                                                                                               <  4:213161/148‑1 (MQ=255)                                                    tCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGtt                                                                                             <  1:59452/149‑1 (MQ=255)                                                      ccGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTtgt                                                                                           <  8:77429/149‑1 (MQ=255)                                                       cGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTtgtg                                                                                          >  4:225837/1‑149 (MQ=255)                                                          tCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGcccccc                                                                                                                                         <  3:259479/99‑1 (MQ=255)                                                          tCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGcccccc                                                                                                                                         >  4:259479/1‑99 (MQ=255)                                                            aCCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGta                                                                                                     <  6:242739/133‑2 (MQ=255)                                                            aCCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCATATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGta                                                                                                     >  5:242739/1‑132 (MQ=255)                                                                    tggcggatcatcagcacatcctggcgctggtaataccgccggttcccccgccgcttcacagggttcagctggtcgaactcCTGCTCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCca                                                                             <  3:271500‑M1/69‑1 (MQ=255)                                                                           gtcACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGtgc                                                                      >  5:224618/1‑149 (MQ=255)                                                                               ccTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCg                                                                  <  7:32343/149‑1 (MQ=255)                                                                                 tttCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCgg                                                                 >  8:241128/1‑148 (MQ=255)                                                                                     gTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGATCTGCCCCCCATACCGGTCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTAtt                                                             <  3:74611/148‑1 (MQ=255)                                                                                     gTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTAtt                                                             <  6:91471/148‑1 (MQ=255)                                                                                     gTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTg                                                            <  5:194787/149‑1 (MQ=255)                                                                                      tCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTgg                                                           >  6:60383/1‑149 (MQ=255)                                                                                            cgctggtaataccgccggttcccccgccgcttcacagggttcagctggtcgaactcCTGCTCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAg                                                     >  4:271500‑M1/57‑149 (MQ=255)                                                                                             gctggtaataccgccggttcccccgccgcttcacagggttcagctggtcgaactcCTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAgg                                                    >  3:78369‑M1/56‑149 (MQ=255)                                                                                              aGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAg                                                     >  7:239417/1‑147 (MQ=255)                                                                                                aaGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGt                                                 >  1:200556/1‑149 (MQ=255)                                                                                                 gtaataccgccggttcccccgccgcttcacagggttcagctggtcgaactcCTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAg                                                     >  6:321906‑M1/52‑144 (MQ=255)                                                                                                 gtaataccgccggttcccccgccgcttcacagggttcagctggtcgaactcCTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGGAAAGCCACACGTGCTGCGGTATTGGGAGCAg                                                     <  5:321906‑M1/93‑1 (MQ=255)                                                                                                 aGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGATCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTTGGAGCAGGAGtt                                                >  8:251973/1‑149 (MQ=255)                                                                                                 aGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGt                                                 <  8:239417/148‑1 (MQ=255)                                                                                                       aGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGTGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGAc                                            >  8:100990/1‑147 (MQ=255)                                                                                                           ccGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCt                                       >  2:330325/1‑148 (MQ=255)                                                                                                           ccGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCt                                       >  5:16561/1‑148 (MQ=255)                                                                                                           ccGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCt                                       >  3:124208/1‑148 (MQ=255)                                                                                                                   aGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCtgt                              <  6:224618/149‑1 (MQ=255)                                                                                                                    ggCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCtgtg                             <  1:330325/149‑1 (MQ=255)                                                                                                                     gCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCtgtg                             >  6:269153/1‑148 (MQ=255)                                                                                                                     gCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCtgtg                             >  6:264662/1‑148 (MQ=255)                                                                                                                               gAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGcggcgg                    <  2:225533/147‑1 (MQ=255)                                                                                                                               gAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCggg                   <  7:241128/148‑1 (MQ=255)                                                                                                                                   cAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAAc              >  1:221852/1‑149 (MQ=255)                                                                                                                                             cgacgaACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTAtt    <  2:221852/149‑1 (MQ=255)                                                                                                                                               acgaACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGTGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTAc  <  7:100990/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                TTCGCGACAAACGCCAGCGGCCGGGCCGTAACCCCAAGACAGGGGAAGAGATCCCGATCACCGCACGGCGCGTCGTCACCTTTCGTCCAGGGCAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTAC  >  NC_002947/2816413‑2816703

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.