New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2816560 = | 42 (0.780) | 5 (0.100) | 4/256 | NT | 10.6% | coding (28/357 nt) | PP_2472 | MerR family transcriptional regulator |
? | NC_002947 | 2816653 = | 44 (0.840) | coding (121/357 nt) | PP_2472 | MerR family transcriptional regulator |
CAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAGGCTCTCCAGTGATGA > NC_002947/2816505‑2816801 | gctggtaataccgccggttcccccgccgcttcacagggttcagctggtcgaactcCTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAgg > 3:78369‑M1/56‑149 (MQ=255) aaGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGt > 1:200556/1‑149 (MQ=255) aGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGATCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTTGGAGCAGGAGtt > 8:251973/1‑149 (MQ=255) aGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGt < 8:239417/148‑1 (MQ=255) aGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGTGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGAc > 8:100990/1‑147 (MQ=255) ccGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCt > 5:16561/1‑148 (MQ=255) ccGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCt > 3:124208/1‑148 (MQ=255) ccGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCt > 2:330325/1‑148 (MQ=255) aGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCtgt < 6:224618/149‑1 (MQ=255) ggCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCtgtg < 1:330325/149‑1 (MQ=255) gCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCtgtg > 6:264662/1‑148 (MQ=255) gCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCtgtg > 6:269153/1‑148 (MQ=255) gAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGcggcgg < 2:225533/147‑1 (MQ=255) gAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCggg < 7:241128/148‑1 (MQ=255) cAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAAc > 1:221852/1‑149 (MQ=255) cgacgaACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTAtt < 2:221852/149‑1 (MQ=255) acgaACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGTGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTAc < 7:100990/149‑1 (MQ=255) cctgctcccaataccgcagcacgtgtggctttacggcacacaactcgctcacttcaccaatggtgaagtagcgtttgcccggtatggggggcagGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAgc > 3:78369‑M2/95‑149 (MQ=255) ctgctcccaataccgcagcacgtgtggctttccggcacacaactcgctcacttcaccaatggtgaagtagcgtttgcccggtatggggggcagGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTAc < 5:321906‑M2/51‑1 (MQ=255) ctgctcccaataccgcagcacgtgtggctttacggcacacaactcgctcacttcaccaatggtgaagtagcgtttgcccggtatggggggcagGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTAc > 6:321906‑M2/94‑144 (MQ=255) ctgctcccaataccgcagcacgtgtggctttacggcacacaactcgctcacttcaccaatggtgaagtagcgtttgcccggtatggggagcagGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAgcg > 4:271500‑M2/94‑149 (MQ=255) CCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAgcgc < 2:284595‑M1/147‑1 (MQ=255) ccATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGAt < 2:200556/149‑1 (MQ=255) ccATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGAt > 4:14182/1‑149 (MQ=255) ccGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGc < 5:264662/148‑1 (MQ=255) ccGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGc < 5:269153/148‑1 (MQ=255) ccGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCt > 6:53576/1‑149 (MQ=255) tggctttacggcacacaactcgctcacttcaccaatggtgaagtagcgtttgcccggtatggggagcagGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCa < 3:271500‑M2/80‑1 (MQ=255) aCTTCACCAATGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACAACCGCCAGGATGTCCTGATGAACCGc > 8:115582/1‑146 (MQ=255) ttCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGAt > 3:282011/1‑149 (MQ=255) cATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCTCCCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTg > 5:66481/1‑149 (MQ=255) cATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTg < 5:53576/149‑1 (MQ=255) aTTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTgc > 4:291389/1‑149 (MQ=255) gTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCgctg > 6:265616/1‑149 (MQ=255) aaGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCgctgct < 4:124208/148‑1 (MQ=255) aGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGt < 3:14182/149‑1 (MQ=255) aGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAg > 6:151305/1‑149 (MQ=255) gTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAgg > 6:26654/1‑149 (MQ=255) gTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAgg > 1:11505/1‑149 (MQ=255) gCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCAc > 3:52610/1‑149 (MQ=255) gCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCAc > 6:244501/1‑149 (MQ=255) ccGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCAc < 6:16561/148‑1 (MQ=255) ccGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCAc > 2:50067/1‑148 (MQ=255) ccGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGGGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCAc < 1:284595/148‑1 (MQ=255) aGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGc < 1:50067/149‑1 (MQ=255) acacGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCgggg > 2:146825/1‑149 (MQ=255) cacGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGgc < 2:11505/149‑1 (MQ=255) cGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGgcgc < 3:225837/149‑1 (MQ=255) ctgcGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGtt < 4:52610/149‑1 (MQ=255) tgcGGTATTGGGAGCAGGAGATCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCAAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCTGGGCGCGGtt > 8:240994/1‑148 (MQ=255) cGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGa < 5:60383/148‑1 (MQ=255) ggTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAgg < 5:151305/149‑1 (MQ=255) gTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAGGc > 8:64847/1‑149 (MQ=255) ttGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAGGctct > 7:316808/1‑149 (MQ=255) gAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAGGCTCTCCAg < 7:64847/149‑1 (MQ=255) gcagGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAGGCTCTCCAGt > 5:164705‑M2/5‑148 (MQ=255) agGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAGGCTCTCCAGtgat > 1:95053‑M2/3‑149 (MQ=255) gAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAGGCTCTCCAGtgatga < 5:26654/149‑1 (MQ=255) | CAGAAGTTGAAGGCCCGGGTTGAGGCCTATGCTGGAACCAAGCCATAACGACGAACTGCCCCCCATACCGGGCAAACGCTACTTCACCATTGGTGAAGTGAGCGAGTTGTGTGCCGTAAAGCCACACGTGCTGCGGTATTGGGAGCAGGAGTTCGACCAGCTGAACCCTGTGAAGCGGCGGGGGAACCGGCGGTATTACCAGCGCCAGGATGTGCTGATGATCCGCCAGATTCGTGCGCTGCTGTATGACCAGGGGTTCACCATTGGCGGGGCGCGGTTGAGGCTCTCCAGTGATGA > NC_002947/2816505‑2816801 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |