New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2956792	39 (0.720)	3 (0.060)	3/248	NT	6.7%	coding (1130/1383 nt)	PP_2588	class III aminotransferase
	?	NC_002947	= 2956869	47 (0.930)					coding (1207/1383 nt)	PP_2588	class III aminotransferase

CCCGGTGGCGGCGGCAGTGGCCATCGCCAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGA  >  NC_002947/2956649‑2956938                                                                                                                                                |                                                                                                                                                    cccGGTGGCGGCGGCAGTGGCCATCGCCAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAg                                                                                                                                                <  8:268724/149‑1 (MQ=255)  ccGGTGGCGGCGGCAGTGGCCATCGCCAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAgg                                                                                                                                               >  4:56620/1‑149 (MQ=255)                aGTGGCCATCGCCAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCtggtgg                                                                                                                                 <  4:88157/149‑1 (MQ=255)                aGTGGCCATCGCCAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCtggtgg                                                                                                                                 <  5:217745/149‑1 (MQ=255)                  tGGCCATCGCCAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTggcg                                                                                                                               >  1:127370/1‑149 (MQ=255)                     ccATCGCCAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGgcggcg                                                                                                                            >  7:30466/1‑149 (MQ=255)                           ccAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTg                                                                                                                         >  7:10877/1‑146 (MQ=255)                           ccAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCa                                                                                                                       <  8:10877/148‑1 (MQ=255)                           ccAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAg                                                                                                                      <  2:240169/149‑1 (MQ=255)                                   aaGGCGCTGCGTGACTAAGGCATCGTGCGCCAGGTGAAGGACGACACTGTGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGcc                                                                                                                <  4:275927/147‑1 (MQ=255)                                        gcTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTCCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGcac                                                                                                          >  6:272464/1‑148 (MQ=255)                                         cTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGcac                                                                                                          >  8:195344/1‑147 (MQ=255)                                         cTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACaa                                                                                                        <  3:56620/149‑1 (MQ=255)                                                  gAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCATGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGAcgcg                                                                                               >  2:181105/1‑149 (MQ=255)                                                           gTGCGCCAGGTGTAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCtt                                                                                      >  1:289607/1‑149 (MQ=255)                                                           gTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCtt                                                                                      <  2:127370/149‑1 (MQ=255)                                                            tGCGCCAGGTGTAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCttt                                                                                     <  2:289607/149‑1 (MQ=255)                                                            tGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCttt                                                                                     >  8:105889/1‑149 (MQ=255)                                                                     tGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAAc                                                                              >  8:114597/1‑146 (MQ=255)                                                                       aaGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACgaga                                                                          <  6:194141/148‑1 (MQ=255)                                                                               cacGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGacctgg                                                                 <  8:288930‑M2/149‑7 (MQ=255)                                                                                  ggggCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGAcctggcct                                                              <  4:91052/149‑1 (MQ=255)                                                                                   gggCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTcgttctcgttggcaaagcgcttgcgcgtcggcttgtgctcggcgaactgcagcgccgccaccagcccggccccttgcacctggccga                                                              <  5:307851‑M1/149‑88 (MQ=255)                                                                                      ccGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTcgttctcgttggcaaagcgcttgcgcgtcggcttgtgctcggcgaactgcagcgccgccaccagcccggccccttgcacctgg                                                                  >  1:195859‑M1/1‑59 (MQ=255)                                                                                      ccGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTcgttctcgttggcaaagcgcttgcgcgtcggcttgtgctcggcgaactgcagcgccgccaccagcccggccccttgcacctgg                                                                  <  2:195859‑M1/142‑84 (MQ=255)                                                                                         tACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTTAGCCAACGAGAACGACCTGGCCTGGCAGt                                                        <  1:20974/149‑1 (MQ=255)                                                                                           ccTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGc                                                      <  7:195344/148‑1 (MQ=255)                                                                                            cTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCg                                                    <  7:114597/149‑1 (MQ=255)                                                                                              gCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCa                                                  >  4:132237/1‑149 (MQ=255)                                                                                                  cgcATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAg                                                         <  6:8691/138‑1 (MQ=255)                                                                                                  cgcATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAg                                                         >  5:8691/1‑138 (MQ=255)                                                                                                            gggAAGTGTTTGCCGACCACCCATTGATCGGCCATGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAg                                    <  1:181105/149‑1 (MQ=255)                                                                                                              gAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAgg                                   >  8:128077/1‑148 (MQ=255)                                                                                                                    tttGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGt                            >  1:324337/1‑149 (MQ=255)                                                                                                                          gACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCAt                      >  3:87803/1‑149 (MQ=255)                                                                                                                              accCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGc                  >  3:240431/1‑149 (MQ=255)                                                                                                                               cccATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGcc                                                     >  2:309037/1‑113 (MQ=255)                                                                                                                               cccATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGcc                                                     <  1:309037/113‑1 (MQ=255)                                                                                                                                ccATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTc                >  6:334397/1‑149 (MQ=255)                                                                                                                                  aTTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAATGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAg                                <  1:152078/131‑1 (MQ=255)                                                                                                                                  aTTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAATGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAg                                >  2:152078/1‑131 (MQ=255)                                                                                                                                  aTTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGa              >  7:20772/1‑149 (MQ=255)                                                                                                                                     gATCGGCCAGGTGCAAGGGTCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGAcc            <  5:272464/148‑1 (MQ=255)                                                                                                                                       tCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGacctggccgatcaatgggtggtcggcaaacacttcccgcaggatgcgctgcaggtacggccc         <  5:307851‑M2/149‑63 (MQ=255)                                                                                                                                       gcGGCCCGGGGGACGGGGCCGGGCGGGGGGCGGCGCGGCAGTTCGCCGAGCACAAGCCGCCGCGCAAGCGCTTT‑GCCAACGAGACCGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTg         <  4:240431/148‑1 (MQ=255)                                                                                                                                           ccAGGTcgttctcgttggcaaagcgcttgcgcgtcggcttgtgctcggcgaactgcagcgccgccaccagcccggccccttgcacctggccgatcaatgggtggtcggcaaacacttcccgcaggatgcgctgcaggtacggccccgtg      <  8:288930‑M1/149‑144 (MQ=255)                                                                                                                                           ccAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGacctggccgatcaatgggtggtcggcaaacacttcccgcaggatgcgctgcaggtacgg            <  2:195859‑M2/142‑60 (MQ=255)                                                                                                                                           ccAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGacctggccgatcaatgggtggtcggcaaacacttcccgcaggatgcgctgcaggtacgg            >  1:195859‑M2/1‑83 (MQ=255)                                                                                                                                              ggTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGga  <  3:132237/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    CCCGGTGGCGGCGGCAGTGGCCATCGCCAACCTGAAGGCGCTGCGTGACGAAGGCATCGTGCGCCAGGTGAAGGACGACACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGA  >  NC_002947/2956649‑2956938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.