New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2956792	39 (0.720)	3 (0.060)	3/248	NT	6.7%	coding (1130/1383 nt)	PP_2588	class III aminotransferase
	?	NC_002947	= 2956869	47 (0.930)					coding (1207/1383 nt)	PP_2588	class III aminotransferase

CACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCG  >  NC_002947/2956727‑2957010                                                                                                                                                |                                                                                                                                              cacGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGacctgg                                                                                                                                         <  8:288930‑M2/149‑7 (MQ=255)    ggggCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGAcctggcct                                                                                                                                      <  4:91052/149‑1 (MQ=255)           tACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTTAGCCAACGAGAACGACCTGGCCTGGCAGt                                                                                                                                <  1:20974/149‑1 (MQ=255)             ccTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGc                                                                                                                              <  7:195344/148‑1 (MQ=255)              cTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCg                                                                                                                            <  7:114597/149‑1 (MQ=255)                gCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCa                                                                                                                          >  4:132237/1‑149 (MQ=255)                    cgcATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAg                                                                                                                                 <  6:8691/138‑1 (MQ=255)                    cgcATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAg                                                                                                                                 >  5:8691/1‑138 (MQ=255)                              gggAAGTGTTTGCCGACCACCCATTGATCGGCCATGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAg                                                                                                            <  1:181105/149‑1 (MQ=255)                                gAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAgg                                                                                                           >  8:128077/1‑148 (MQ=255)                                      tttGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGt                                                                                                    >  1:324337/1‑149 (MQ=255)                                            gACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCAt                                                                                              >  3:87803/1‑149 (MQ=255)                                                accCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGc                                                                                          >  3:240431/1‑149 (MQ=255)                                                 cccATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGcc                                                                                                                             >  2:309037/1‑113 (MQ=255)                                                 cccATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGcc                                                                                                                             <  1:309037/113‑1 (MQ=255)                                                  ccATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTc                                                                                        >  6:334397/1‑149 (MQ=255)                                                    aTTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAATGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAg                                                                                                        >  2:152078/1‑131 (MQ=255)                                                    aTTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAATGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAg                                                                                                        <  1:152078/131‑1 (MQ=255)                                                    aTTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGa                                                                                      >  7:20772/1‑149 (MQ=255)                                                       gATCGGCCAGGTGCAAGGGTCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGAcc                                                                                    <  5:272464/148‑1 (MQ=255)                                                         tCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGacctggccgatcaatgggtggtcggcaaacacttcccgcaggatgcgctgcaggtacggccc                                                                                 <  5:307851‑M2/149‑63 (MQ=255)                                                         gcGGCCCGGGGGACGGGGCCGGGCGGGGGGCGGCGCGGCAGTTCGCCGAGCACAAGCCGCCGCGCAAGCGCTTT‑GCCAACGAGACCGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTg                                                                                 <  4:240431/148‑1 (MQ=255)                                                             ccAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGacctggccgatcaatgggtggtcggcaaacacttcccgcaggatgcgctgcaggtacgg                                                                                    >  1:195859‑M2/1‑83 (MQ=255)                                                             ccAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGacctggccgatcaatgggtggtcggcaaacacttcccgcaggatgcgctgcaggtacgg                                                                                    <  2:195859‑M2/142‑60 (MQ=255)                                                                ggTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGga                                                                          <  3:132237/149‑1 (MQ=255)                                                                       ggggCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCAt                                                                   >  6:176126/1‑149 (MQ=255)                                                                       ggggCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCAt                                                                   >  2:276586/1‑149 (MQ=255)                                                                          gCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATc                                                                     <  8:174013/144‑1 (MQ=255)                                                                          gCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATc                                                                     >  7:174013/1‑144 (MQ=255)                                                                                   gtggCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCtt                                                       >  5:273912/1‑149 (MQ=255)                                                                                   gtggCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCtt                                                       >  5:249374/1‑149 (MQ=255)                                                                                   gtggCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCtt                                                       >  7:127338/1‑149 (MQ=255)                                                                                   gtggCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCt                                                        <  5:334397/148‑1 (MQ=255)                                                                                      gcggcgCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGAt                                                    <  6:222848/149‑1 (MQ=255)                                                                                            cTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCaa                                              <  6:249374/149‑1 (MQ=255)                                                                                               cAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCg                                                                                                              <  4:261370/82‑1 (MQ=255)                                                                                               cAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCg                                                                                                              >  3:261370/1‑82 (MQ=255)                                                                                                 gTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACcaca                                         <  2:324337/149‑1 (MQ=255)                                                                                                    cGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGc                                       <  7:128077/148‑1 (MQ=255)                                                                                                              aaGCCGACGCGCAAGCGCTTT‑GCCCACGAGCACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGAt                              >  4:42015/1‑147 (MQ=255)                                                                                                              aaGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGAt                              >  2:268172/1‑147 (MQ=255)                                                                                                               aGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAg                           <  6:273912/149‑1 (MQ=255)                                                                                                                 ccGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTggg                                                                               <  8:184360/95‑1 (MQ=255)                                                                                                                 ccGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTggg                                                                               >  7:184360/1‑95 (MQ=255)                                                                                                                  cGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCtg                        >  2:282481/1‑149 (MQ=255)                                                                                                                        gcAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGAGCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCtggtg                     >  1:337587/1‑146 (MQ=255)                                                                                                                          aaGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGagaa                <  7:288930/149‑1 (MQ=255)                                                                                                                          aaGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGagaa                <  8:30466/149‑1 (MQ=255)                                                                                                                            gcgcTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGACCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGagaaga              <  2:337587/149‑1 (MQ=255)                                                                                                                                       aaCGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGc    >  3:173941/1‑149 (MQ=255)                                                                                                                                       aaCGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGc    <  4:87803/149‑1 (MQ=255)                                                                                                                                           agaACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCg  >  3:218494/1‑147 (MQ=255)                                                                                                                                                |                                                                                                                                              CACGGGGCCGTACCTGCAGCGCATCCTGCGGGAAGTGTTTGCCGACCACCCATTGATCGGCCAGGTGCAAGGGGCCGGGCTGGTGGCGGCGCTGCAGTTCGCCGAGCACAAGCCGACGCGCAAGCGCTTT‑GCCAACGAGAACGACCTGGCCTGGCAGTGCCGCACCTTTGGTTTCGAGGAAGGGGTGATCATTCGCTCGACCCTGGGCCGGATGATCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCG  >  NC_002947/2956727‑2957010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.