| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3051334 = | 41 (0.760) | 6 (0.120) | 6/252 | NT | 13.9% | coding (34/1899 nt) | PP_2664 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 3051361 = | 35 (0.680) | coding (61/1899 nt) | PP_2664 | two‑component system sensor histidine kinase/response regulator | |||||
CGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAG > NC_002947/3051186‑3051477 | ggttcaacgcatcggtgcgttcgcgtacctgctcggccagcaccactgaatgctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgc < 3:101913‑M1/1‑1 (MQ=255) caacgcatcggtgcgttcgcgtacctgctcggccagcaccactgaatgctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgctgc > 7:274463‑M1/145‑148 (MQ=255) gcgcGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCg > 8:118938/1‑149 (MQ=255) cgTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCt < 6:150610/149‑1 (MQ=255) ccTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTgca < 5:118711/148‑1 (MQ=255) cTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTgcag < 7:118938/148‑1 (MQ=255) ctgctcggccagcaccactgaatgctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTgcagca < 6:84518‑M1/29‑1 (MQ=255) cgAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAg < 3:114635/149‑1 (MQ=255) ggccagcaccactgaatgctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGaa > 5:84518‑M1/115‑149 (MQ=255) ggTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAg < 2:18742/149‑1 (MQ=255) gATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGa > 6:281594/1‑120 (MQ=255) gATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCAGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTg > 3:307240/1‑149 (MQ=255) gctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgacattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGa < 8:295631‑M1/34‑1 (MQ=255) gctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgacattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGa > 7:295631‑M1/98‑131 (MQ=255) tggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAAc > 2:317348‑M1/96‑131 (MQ=255) tggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAAc < 1:317348‑M1/36‑1 (MQ=255) cAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTa < 5:286599/147‑1 (MQ=255) aaCACGTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTGACCGGGGTCGCCATTGCCCGCTACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCa < 7:306973/149‑1 (MQ=255) gaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgctg < 3:14131‑M1/3‑1 (MQ=255) gaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgctg > 4:14131‑M1/94‑96 (MQ=255) ccTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCa < 2:44871/145‑1 (MQ=255) ccTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCa > 1:44871/1‑145 (MQ=255) agaACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTg < 7:258541/149‑1 (MQ=255) gaACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGCCCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCCCTGa > 7:278260/1‑149 (MQ=255) gTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAg > 7:148516/1‑149 (MQ=255) ttCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAgc > 5:346785/1‑149 (MQ=255) ttCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAgc < 4:307240/149‑1 (MQ=255) aaTGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACca > 5:25379/1‑111 (MQ=255) aaTGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACca < 6:25379/111‑1 (MQ=255) tGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATc > 4:91951/1‑149 (MQ=255) cATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTgcag < 2:246630/95‑1 (MQ=255) cATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTgcag > 1:246630/1‑95 (MQ=255) caTCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGc < 5:322159/149‑1 (MQ=255) caTCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGc < 6:346785/149‑1 (MQ=255) tCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGt < 8:148516/149‑1 (MQ=255) gTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCa > 7:231992/1‑148 (MQ=255) tCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCggg < 6:174349/136‑1 (MQ=255) tCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCggg > 5:174349/1‑136 (MQ=255) ccATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATAcgc > 4:15102/1‑149 (MQ=255) cccGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGCCCCGGGGCAACGACCCATACGCCGCGtt > 5:115132/1‑149 (MQ=255) cGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTc > 1:22774/1‑148 (MQ=255) gCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCa < 8:231992/149‑1 (MQ=255) gCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCa < 6:303211/149‑1 (MQ=255) gCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCGGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCAtt > 5:7351/1‑147 (MQ=255) tcctGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAgtg > 4:64997/1‑149 (MQ=255) tcctGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAgtg > 6:319459/1‑149 (MQ=255) ctGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCggg < 6:95095/112‑1 (MQ=255) ctGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCggg > 5:95095/1‑112 (MQ=255) ggtcgCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTcc < 2:31569/131‑1 (MQ=255) ggtcgCTGAACTGCAGGCCGAGCTGACCCGCCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTcc > 1:31569/1‑131 (MQ=255) gCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCg < 3:91951/148‑1 (MQ=255) tGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAg > 1:11619/1‑148 (MQ=255) | CGCGGCCTGGAGCCGGTCGGCGCGTTCCTGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAG > NC_002947/3051186‑3051477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |