New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3051334 =	41 (0.760)	6 (0.120)	6/252	NT	13.9%	coding (34/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3051361 =	35 (0.680)					coding (61/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator

TGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTACGCGAACGCACCGATGCGTTGAACC  >  NC_002947/3051214‑3051508                                                                                                                                                    |                                                                                                                                                    ctgctcggccagcaccactgaatgctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTgcagca                                                                                                                                                    <  6:84518‑M1/29‑1 (MQ=255)     cgAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAg                                                                                                                                                <  3:114635/149‑1 (MQ=255)       ggccagcaccactgaatgctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGaa                                                                                                                                              >  5:84518‑M1/115‑149 (MQ=255)              ggTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAg                                                                                                                                       <  2:18742/149‑1 (MQ=255)                 gATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCAGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTg                                                                                                                                    >  3:307240/1‑149 (MQ=255)                        gctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgacattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGa                                                                                                                                               <  8:295631‑M1/34‑1 (MQ=255)                        gctggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgacattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGa                                                                                                                                               >  7:295631‑M1/98‑131 (MQ=255)                          tggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAAc                                                                                                                                             >  2:317348‑M1/96‑131 (MQ=255)                          tggaacgcggcgtatgggtcgttgccccgggtcacgcccgactcgatgcgctcgatcagtgcgtcattgatacgctgcagcttgtggttctgatgCTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAAc                                                                                                                                             <  1:317348‑M1/36‑1 (MQ=255)                          cAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTa                                                                                                                             <  5:286599/147‑1 (MQ=255)                           aaCACGTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTGACCGGGGTCGCCATTGCCCGCTACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCa                                                                                                                          <  7:306973/149‑1 (MQ=255)                               ccTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCa                                                                                                                          <  2:44871/145‑1 (MQ=255)                               ccTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCa                                                                                                                          >  1:44871/1‑145 (MQ=255)                                      agaACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTg                                                                                                               <  7:258541/149‑1 (MQ=255)                                       gaACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGCCCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCCCTGa                                                                                                              >  7:278260/1‑149 (MQ=255)                                            gTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAg                                                                                                         >  7:148516/1‑149 (MQ=255)                                             ttCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAgc                                                                                                        <  4:307240/149‑1 (MQ=255)                                             ttCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAgc                                                                                                        >  5:346785/1‑149 (MQ=255)                                                aaTGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACca                                                                                                                                           <  6:25379/111‑1 (MQ=255)                                                aaTGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACca                                                                                                                                           >  5:25379/1‑111 (MQ=255)                                                  tGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATc                                                                                                   >  4:91951/1‑149 (MQ=255)                                                           caTCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGc                                                                                          <  6:346785/149‑1 (MQ=255)                                                           caTCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGc                                                                                          <  5:322159/149‑1 (MQ=255)                                                             tCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGt                                                                                        <  8:148516/149‑1 (MQ=255)                                                                                 gTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCa                                                                     >  7:231992/1‑148 (MQ=255)                                                                                  tCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCggg                                                                                <  6:174349/136‑1 (MQ=255)                                                                                  tCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCggg                                                                                >  5:174349/1‑136 (MQ=255)                                                                                     ccATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATAcgc                                                                >  4:15102/1‑149 (MQ=255)                                                                                           cccGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGCCCCGGGGCAACGACCCATACGCCGCGtt                                                          >  5:115132/1‑149 (MQ=255)                                                                                             cGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTc                                                         >  1:22774/1‑148 (MQ=255)                                                                                              gCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCa                                                       <  8:231992/149‑1 (MQ=255)                                                                                              gCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCa                                                       <  6:303211/149‑1 (MQ=255)                                                                                                     gCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCGGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCAtt                                                  >  5:7351/1‑147 (MQ=255)                                                                                                        tcctGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAgtg                                             >  4:64997/1‑149 (MQ=255)                                                                                                        tcctGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAgtg                                             >  6:319459/1‑149 (MQ=255)                                                                                                          ctGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCggg                                                                                >  5:95095/1‑112 (MQ=255)                                                                                                          ctGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCggg                                                                                <  6:95095/112‑1 (MQ=255)                                                                                                               ggtcgCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTcc                                                        <  2:31569/131‑1 (MQ=255)                                                                                                               ggtcgCTGAACTGCAGGCCGAGCTGACCCGCCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTcc                                                        >  1:31569/1‑131 (MQ=255)                                                                                                                gttctgatgctgcagccgggtcagctcggcctgcagCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCa                                                       <  1:317348‑M2/95‑1 (MQ=255)                                                                                                                gttctgatgctgcagccgggtcagctcggcctgcagCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCa                                                       >  2:317348‑M2/37‑131 (MQ=255)                                                                                                                 ttctgatgctgcagccgggtcagctcggcctgcagCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGcc                                    >  5:84518‑M2/36‑149 (MQ=255)                                                                                                                  tctgatgctgcagccgggtcagctcggcctgcagCATCAGAACCACAAGCTGCAGCGTATCAATGTCGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGc                                                     <  8:295631‑M2/97‑1 (MQ=255)                                                                                                                  tctgatgctgcagccgggtcagctcggcctgcagCATCAGAACCACAAGCTGCAGCGTATCAATGTCGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGc                                                     >  7:295631‑M2/35‑131 (MQ=255)                                                                                                                   gCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCg                                   <  3:91951/148‑1 (MQ=255)                                                                                                                     tGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAg                                 >  1:11619/1‑148 (MQ=255)                                                                                                                       tgctgcagccgggtcagctcggcctgcagCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAg                              <  6:84518‑M2/120‑1 (MQ=255)                                                                                                                          TGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGCCGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTa                           <  5:50797‑M1/149‑1 (MQ=255)                                                                                                                                         cccGGCTGCAGCATCAGAACCACAAGCTGAAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTACGCGAACGCACCGAt            >  4:101913/1‑149 (MQ=255)                                                                                                                                          ccGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTACGCGAACGCACCGATg           >  6:279659/1‑149 (MQ=255)                                                                                                                                           cGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTACGCGAACGCACCGATGc          <  3:301469/149‑1 (MQ=255)                                                                                                                                                gcagCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTACGCGAACGCACCGATGCGTTg      >  7:274463‑M2/5‑148 (MQ=255)                                                                                                                                                 cagCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTc                                                         <  3:14131‑M2/93‑1 (MQ=255)                                                                                                                                                 cagCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTc                                                         >  4:14131‑M2/4‑96 (MQ=255)                                                                                                                                                   gCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTACGCGAACGCACCGATGCGTTGAAcc  <  3:101913‑M2/148‑1 (MQ=255)                                                                                                                                                    caTCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTACGCGAACGCACCGATGCGTTGAAc   >  6:39890/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGCGCGAGCAACGGGTGATTGGCTTCAACACCTACGGAGAACAGTTCAATGGCATGCACATCAACCAGACCTTCACCGGGGTCGCCATTGCCCGCAACCGGCCTCCTGTCGGTCGCTGAACTGCAGGCCGAGCTGACCCGGCTGCAGCATCAGAACCACAAGCTGCAGCGTATCAATGACGCACTGATCGAGCGCATCGAGTCGGGCGTGACCCGGGGCAACGACCCATACGCCGCGTTCCAGCATTCAGTGGTGCTGGCCGAGCAGGTACGCGAACGCACCGATGCGTTGAACC  >  NC_002947/3051214‑3051508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.