New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3243408 =47 (0.870)4 (0.080) 3/254 NT 8.7% coding (1485/2289 nt) PP_2839 hypothetical protein
?NC_002947 3243481 = 39 (0.750)coding (1558/2289 nt) PP_2839 hypothetical protein

GCGCCCTGCAGCAGTGCGTCGGGGTGATTCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGC  >  NC_002947/3243260‑3243555
                                                                                                                                                    |                                                                                                                                                   
gcgcCCTGCAGCAGTGCGTCGGGGTGATTCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATc                                                                                                                                                     <  4:274626/149‑1 (MQ=255)
 cgcCCTGCAGCAGTGCGTCGGGGTGATTCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATca                                                                                                                                                    <  7:46534/149‑1 (MQ=255)
       gcagcaGTGCGTCGGGGTGATTCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATcagccagc                                                                                                                                              >  4:156462/1‑149 (MQ=255)
                   cGGGGTGATTCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCcgc                                                                                                                                  >  2:282262/1‑149 (MQ=255)
                     gggTGATTCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCcgcg                                                                                                                                 >  4:97700/1‑148 (MQ=255)
                      ggTGATTCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCgcgc                                                                                                                                >  5:267749/1‑148 (MQ=255)
                           ttCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAgcgg                                                                                                                          <  1:282262/149‑1 (MQ=255)
                              aGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAgcggcg                                                                                                                        <  3:301963/148‑1 (MQ=255)
                              aGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAgcggcg                                                                                                                        <  3:297161/148‑1 (MQ=255)
                                gAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCt                                                                                                                     >  1:147888/1‑149 (MQ=255)
                                gAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCAACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCcg                                                                                                                                   <  4:259284/135‑1 (MQ=255)
                                gAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCAACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCcg                                                                                                                                   >  3:259284/1‑135 (MQ=255)
                                  gtccagccaggcggtatcggctggcatgcccagcaggtcgctgtagaagtgccgcgggctcaacgtggcggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagcag                                                                                                                                                   <  6:234774‑M1/3‑1 (MQ=255)
                                  gtccagccaggcggtatcggctggcatgcccagcaggtcgctgtagaagtgccgcgggctcaacgtggcggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagcag                                                                                                                                                   >  5:234774‑M1/115‑117 (MQ=255)
                                  aCAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTgg                                                                                                                   <  6:333524/149‑1 (MQ=255)
                                  aCAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTgg                                                                                                                   <  4:139963/149‑1 (MQ=255)
                                  aCAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTgg                                                                                                                   <  3:156462/149‑1 (MQ=255)
                                         aaCCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCt                                                                                                            >  4:104777/1‑149 (MQ=255)
                                          aCCAGGCACACACGAACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCGGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCtg                                                                                                           >  2:107165/1‑149 (MQ=255)
                                            cAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCtgtg                                                                                                         >  2:87819/1‑149 (MQ=255)
                                                   ccACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCTGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATATTCTGTTAGACATCAGCCAGCGCCAGGGCCCGCGCAAGCCGCGGCTGGCCCCGCTGTGACTgcg                                                                                                   >  8:148817/1‑148 (MQ=255)
                                                    ggctggcatgcccagcaggtcgctgtagaagtgccgcgggctcaacgtggcggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTgcgc                                                                                                  <  6:207262‑M1/52‑1 (MQ=255)
                                                      cGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAAt                                                                                               <  3:97700/149‑1 (MQ=255)
                                                      cGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAAt                                                                                               <  1:62546/149‑1 (MQ=255)
                                                         acaTCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGt                                                                                             >  4:68366/1‑148 (MQ=255)
                                                                cccccAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCgg                                                                                     >  3:123567/1‑149 (MQ=255)
                                                                      gtcgctgtagaagtgccgcgggctcaacgtggcggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGgc                                                                               >  5:207262‑M1/79‑149 (MQ=255)
                                                                         gtTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGgctgc                                                                            >  6:250963/1‑149 (MQ=255)
                                                                            gtagaagtgcctcgggctcaacgtggcggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagCAGCCAGCGCCAGGGCCCGCTCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTgg                                                                         >  8:212093‑M1/73‑149 (MQ=255)
                                                                            gCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGctgctg                                                                          <  1:87819/148‑1 (MQ=255)
                                                                             tagaagtgcctcgggctcaacgtggaggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagCAGCCAGCGCCAGGGCCCGCGCAAGCGGATGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTgg                                                                         >  8:212094‑M1/72‑148 (MQ=255)
                                                                             cAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTgg                                                                         >  5:190675/1‑148 (MQ=255)
                                                                             cAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCAGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGctgctgtc                                                                        <  3:104777/149‑3 (MQ=255)
                                                                             cAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGACGAGCTCTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGTCCACGCTGTGCCTGCGCAATGTCACGCCGGCGCGGCTGCTGGc                                                                        <  6:223160/149‑1 (MQ=255)
                                                                              aGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGca                                                                       >  6:261813/1‑149 (MQ=255)
                                                                                  ctactaTCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGcacca                                                                    <  6:190675/148‑1 (MQ=255)
                                                                                       aTCAGGCCTTGCAGTTCTGTCTGGTTGCCGAGCTGTTCGACGAGCTTTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCATTGTCACCCCGGCGCGGCTGCTGGCACCACGCAt                                                               <  8:147162/148‑1 (MQ=255)
                                                                                          aGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCa                                                            <  4:123567/148‑1 (MQ=255)
                                                                                                   aGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCAAGCATGCAGGCGgcgcg                                                   >  3:55945/1‑148 (MQ=255)
                                                                                                       cTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGTAGGCGGCGCGCAgt                                               <  2:147888/148‑1 (MQ=255)
                                                                                                              gTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCt                                       <  3:68366/149‑1 (MQ=255)
                                                                                                                  ccGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGttt                                   >  3:150967/1‑149 (MQ=255)
                                                                                                                   cGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGttt                                   >  8:154749/1‑148 (MQ=255)
                                                                                                                     aGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTcc                                >  4:185395/1‑149 (MQ=255)
                                                                                                                     aGCTGTTCGACGAGCAGTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTcc                                <  8:64991/149‑1 (MQ=255)
                                                                                                                          ttCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCAc                           <  5:223019/149‑1 (MQ=255)
                                                                                                                               cgaGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGa                      <  7:154749/149‑1 (MQ=255)
                                                                                                                                gaGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAg                     <  3:185395/149‑1 (MQ=255)
                                                                                                                                   cATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGccc                  >  7:36539/1‑149 (MQ=255)
                                                                                                                                   cATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGccc                  >  7:59877/1‑149 (MQ=255)
                                                                                                                                     ttttCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCcgc                <  8:59877/149‑1 (MQ=255)
                                                                                                                                       ttCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGc                              <  2:232618/133‑1 (MQ=255)
                                                                                                                                       ttCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGc                              >  1:232618/1‑133 (MQ=255)
                                                                                                                                             tCGACATCAGACAGCGCCAGGTCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTc        >  3:188178/1‑149 (MQ=255)
                                                                                                                                              cGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTc        <  6:267749/148‑1 (MQ=255)
                                                                                                                                               gACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTa      >  2:199414/1‑149 (MQ=255)
                                                                                                                                                    CAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGc  <  3:319233‑M1/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GCGCCCTGCAGCAGTGCGTCGGGGTGATTCAGGAACAGATGAACCAGGCACCCACGCACATCGACCCCCAGGTGTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCGCGGCACTTCTACAGC  >  NC_002947/3243260‑3243555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.