New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3243408 =	47 (0.870)	4 (0.080)	3/254	NT	8.7%	coding (1485/2289 nt)	PP_2839	hypothetical protein
	?	NC_002947	3243481 =	39 (0.750)					coding (1558/2289 nt)	PP_2839	hypothetical protein

GTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGCCGAACAGCTGGAA  >  NC_002947/3243333‑3243627                                                                                                                                                     |                                                                                                                                                     gtTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGgctgc                                                                                                                                                      >  6:250963/1‑149 (MQ=255)    gtagaagtgcctcgggctcaacgtggcggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagCAGCCAGCGCCAGGGCCCGCTCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTgg                                                                                                                                                   >  8:212093‑M1/73‑149 (MQ=255)    gCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGctgctg                                                                                                                                                    <  1:87819/148‑1 (MQ=255)     tagaagtgcctcgggctcaacgtggaggaaaacagcgtcacactgcgcgccgcctgcatgcgtggtgccagCAGCCAGCGCCAGGGCCCGCGCAAGCGGATGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTgg                                                                                                                                                   >  8:212094‑M1/72‑148 (MQ=255)     cAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTgg                                                                                                                                                   >  5:190675/1‑148 (MQ=255)     cAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCAGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGctgctgtc                                                                                                                                                  <  3:104777/149‑3 (MQ=255)     cAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGACGAGCTCTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGTCCACGCTGTGCCTGCGCAATGTCACGCCGGCGCGGCTGCTGGc                                                                                                                                                  <  6:223160/149‑1 (MQ=255)      aGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGca                                                                                                                                                 >  6:261813/1‑149 (MQ=255)          ctactaTCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGcacca                                                                                                                                              <  6:190675/148‑1 (MQ=255)               aTCAGGCCTTGCAGTTCTGTCTGGTTGCCGAGCTGTTCGACGAGCTTTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCATTGTCACCCCGGCGCGGCTGCTGGCACCACGCAt                                                                                                                                         <  8:147162/148‑1 (MQ=255)                  aGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCa                                                                                                                                      <  4:123567/148‑1 (MQ=255)                           aGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCAAGCATGCAGGCGgcgcg                                                                                                                             >  3:55945/1‑148 (MQ=255)                               cTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGTAGGCGGCGCGCAgt                                                                                                                         <  2:147888/148‑1 (MQ=255)                                      gTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCt                                                                                                                 <  3:68366/149‑1 (MQ=255)                                          ccGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGttt                                                                                                             >  3:150967/1‑149 (MQ=255)                                           cGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGttt                                                                                                             >  8:154749/1‑148 (MQ=255)                                             aGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTcc                                                                                                          >  4:185395/1‑149 (MQ=255)                                             aGCTGTTCGACGAGCAGTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTcc                                                                                                          <  8:64991/149‑1 (MQ=255)                                                  ttCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCAc                                                                                                     <  5:223019/149‑1 (MQ=255)                                                       cgaGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGa                                                                                                <  7:154749/149‑1 (MQ=255)                                                        gaGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAg                                                                                               <  3:185395/149‑1 (MQ=255)                                                           cATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑ccc                                                                                           >  7:36539/1‑149 (MQ=255)                                                           cATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑ccc                                                                                           >  7:59877/1‑149 (MQ=255)                                                             ttttCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCcgc                                                                                         <  8:59877/149‑1 (MQ=255)                                                               ttCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGc                                                                                                        >  1:232618/1‑133 (MQ=255)                                                               ttCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGc                                                                                                        <  2:232618/133‑1 (MQ=255)                                                                     tCGACATCAGACAGCGCCAGGTCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTc                                                                                 >  3:188178/1‑149 (MQ=255)                                                                      cGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTc                                                                                 <  6:267749/148‑1 (MQ=255)                                                                       gACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTa                                                                               >  2:199414/1‑149 (MQ=255)                                                                        ccagcagccgcgccggggtgacattgcgcaggcacagcgtggccagccgccgcttgagcgggccctggcgctggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGAGGCACTTCTAc                                                                              >  8:212093‑M2/78‑149 (MQ=255)                                                                        ccagcagccgcgccggggtgacattgcgcaggcacagcgtggccagcatccgcttgcgcgggccctggcgctggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCTCCACGTTGAG‑CCCGAGGCACTTCTa                                                                               >  8:212094‑M2/78‑148 (MQ=255)                                                                            CAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑Gc                                                                          <  3:319233‑M1/148‑1 (MQ=255)                                                                              gccgcgccggggtgacattgcgcaggcacagcgtggccagccgccgcttgcgcgggccctggcgctggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGAc                                                                       >  5:207262‑M2/72‑149 (MQ=255)                                                                                      cAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTggg                                                               >  8:193183/1‑149 (MQ=255)                                                                                               cgcAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGc                                                      <  5:261813/149‑1 (MQ=255)                                                                                                 gcgcaggcacagcgtggccagccgccgcttgcgcgggccctggcgctggctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGcc                                                     <  6:207262‑M2/96‑1 (MQ=255)                                                                                                          gcTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCct                                           <  4:319233/149‑1 (MQ=255)                                                                                                            tGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCctgg                                         >  1:338591/1‑149 (MQ=255)                                                                                                                      gtgCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTCTGACGCTGTTTTCCGCCACGTTGAG‑CCCTCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTgg                               >  4:257393/1‑149 (MQ=255)                                                                                                                       tgCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTgg                               <  7:193183/148‑1 (MQ=255)                                                                                                                       tgCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTg                                <  4:55945/147‑1 (MQ=255)                                                                                                                         ccTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCa                                                        >  1:197293/1‑121 (MQ=255)                                                                                                                         ccTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCa                                                        <  2:197293/121‑1 (MQ=255)                                                                                                                          cTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCcgc                           >  8:272935/1‑149 (MQ=255)                                                                                                                                aaTGTGACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGtt                     >  7:298823/1‑149 (MQ=255)                                                                                                                                      aCCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCg                                              >  6:314471/1‑118 (MQ=255)                                                                                                                                      aCCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCg                                              <  5:314471/118‑1 (MQ=255)                                                                                                                                      aCCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTg                <  2:338591/148‑1 (MQ=255)                                                                                                                                       ccccGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGcc              <  8:36539/149‑1 (MQ=255)                                                                                                                                        cccGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTgtgg             >  4:140892/1‑146 (MQ=255)                                                                                                                                          cGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGTTGGACGTGGCCGCGCCGTTCCGTGCCGaa           <  1:199414/149‑1 (MQ=255)                                                                                                                                                  ctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGAc                                   <  6:234774‑M2/114‑1 (MQ=255)                                                                                                                                                  ctgCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGAc                                   >  5:234774‑M2/4‑117 (MQ=255)                                                                                                                                                     ctgTCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAGCCCCGCGGCACTTCTACACGTGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGCCGAACAGCTGGaa  <  1:107165/149‑1 (MQ=255)                                                                                                                                                     ctgGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGCCGAACAGCTGGaa  <  7:272935/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GTTGCAGTTCTACTATCAGGCCTTGCAGTTCTGCCGGGTTGCCGAGCTGTTCGACGAGCATTTTCTGTTCGACATCAGCCAGCGCCAGGGCCCGCGCAAGCGGCGGCTGGCCACGCTGTGCCTGCGCAATGTCACCCCGGCGCGGCTGCTGGCACCACGCATGCAGGCGGCGCGCAGTGTGACGCTGTTTTCCGCCACGTTGAG‑CCCGCGGCACTTCTACA‑GCGACCTGCTGGGCATGCCAGCCGATACCGCCTGGCTGGACGTGGCCGCGCCGTTCCGTGCCGAACAGCTGGAA  >  NC_002947/3243333‑3243627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.