New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3443566 =	9 (0.170)	3 (0.060)	3/252	NT	17.3%	coding (2325/3270 nt)	PP_3062	tail length determination protein
	?	NC_002947	3443605 =	20 (0.390)					coding (2364/3270 nt)	PP_3062	tail length determination protein

TTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGT  >  NC_002947/3443421‑3443694                                                                                                                                                  |                                                                                                                                 gagtgccggcaacacgaccgggtctttcgatgccgggtcgcgcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttcctttgctggcatcaccgttacgcgtaacgctttacccagtgccg                                                                                                                               <  4:249544‑M1/4‑1 (MQ=255)   gtgccggcaacacgaccgggtctttcgatgccgggtcgcgcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtgccggc                                                                                                                             <  5:186931‑M1/6‑1 (MQ=255)       cggcaacacgaccgggtctttcgatgccgggtcgcgcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCcgac                                                                                                                         <  3:172541‑M1/10‑1 (MQ=255)            gcAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGCCGAGCCGGCCGACGATc                                                                                                                     >  3:6367/1‑148 (MQ=255)                            ttGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATcg                                                                                                    >  3:249544/1‑149 (MQ=255)                                 tCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCgccgcc                                                                                               >  1:5700/1‑149 (MQ=255)                                   gggtcgcgcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCgg                                                                                             >  3:267990‑M1/112‑149 (MQ=255)                                      tcgcgcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCAc                                                                                          >  7:290988‑M1/109‑149 (MQ=255)                                          gcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTggg                                                                                      >  4:172541‑M1/105‑149 (MQ=255)                                                    gTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTa                                                                            >  3:164118/1‑149 (MQ=255)                                                                                           gCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAg                                     >  2:220240/1‑149 (MQ=255)                                                                                             aTGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGcc                                   >  8:166466/1‑149 (MQ=255)                                                                                                                      ggCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACCAACAAGCCGAGCCTGAATCGCCTCAGGCACTGGGTAAAGCGTAACGCGTAACGGTGATGCAAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGAt          >  6:62843/1‑149 (MQ=255)                                                                                                                          gggCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCgg      <  1:220240/149‑1 (MQ=255)                                                                                                                              aaGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAgt  <  7:173931/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                 TTGCCGGTGCTGCAGCGGGGGCGGCTATTGGCTCCGTGGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGT  >  NC_002947/3443421‑3443694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.