New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3443566 =	9 (0.170)	3 (0.060)	3/252	NT	17.3%	coding (2325/3270 nt)	PP_3062	tail length determination protein
	?	NC_002947	3443605 =	20 (0.390)					coding (2364/3270 nt)	PP_3062	tail length determination protein

GGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCGGTCGTGTTGCCGGCACTC  >  NC_002947/3443458‑3443749                                                                                                                                                    |                                                                                                                                                 tcgcgcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCAc                                                                                                                                                 >  7:290988‑M1/109‑149 (MQ=255)     gcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTggg                                                                                                                                             >  4:172541‑M1/105‑149 (MQ=255)               gTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTa                                                                                                                                   >  3:164118/1‑149 (MQ=255)                                                      gCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAg                                                                                            >  2:220240/1‑149 (MQ=255)                                                        aTGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGcc                                                                                          >  8:166466/1‑149 (MQ=255)                                                                                 ggCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACCAACAAGCCGAGCCTGAATCGCCTCAGGCACTGGGTAAAGCGTAACGCGTAACGGTGATGCAAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGAt                                                                 >  6:62843/1‑149 (MQ=255)                                                                                     gggCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCgg                                                             <  1:220240/149‑1 (MQ=255)                                                                                         aaGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAgt                                                         <  7:173931/149‑1 (MQ=255)                                                                                                       cccagtgccggcggcgattccggctcggcttgatcgtcggccggcACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCcgc                                           >  4:172541‑M2/46‑149 (MQ=255)                                                                                                           gtgccggcggcgattccggctcggcttgatcgtcggccggcACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGa                                       >  7:290988‑M2/42‑149 (MQ=255)                                                                                                              ccggcggcgattccggctcggcttgatcgtcggccggcACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGAccc                                    >  3:267990‑M2/39‑149 (MQ=255)                                                                                                              CCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTa                                                   <  2:16427‑M1/134‑1 (MQ=255)                                                                                                              CCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTa                                                   >  1:16427‑M1/1‑134 (MQ=255)                                                                                                                   cgacgaTCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCAt                               >  1:223872/1‑149 (MQ=255)                                                                                                                         tCAAGCCGAGCCGTAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGa                            >  1:64413/1‑146 (MQ=255)                                                                                                                         tCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGa                            >  5:59077/1‑146 (MQ=255)                                                                                                                            agccgagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAACGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGAcc                      >  6:186931/1‑149 (MQ=255)                                                                                                                             gccgagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGAccc                     >  7:77929/1‑149 (MQ=255)                                                                                                                             gccgagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGAccc                     >  4:66001/1‑149 (MQ=255)                                                                                                                              ccgagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCg                    >  6:298068/1‑149 (MQ=255)                                                                                                                              ccgagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGGCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCg                    <  4:29441/149‑1 (MQ=255)                                                                                                                               cgagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCgg                   >  2:250674/1‑149 (MQ=255)                                                                                                                                gagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCAt                               >  1:196991/1‑136 (MQ=255)                                                                                                                                gagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCAt                               <  2:196991/136‑1 (MQ=255)                                                                                                                                gagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCGGt                  >  7:210796/1‑149 (MQ=255)                                                                                                                                gagccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATC‑‑CGCGACCCGGCATCGAAAGACCCGGTCg                >  7:172978/1‑149 (MQ=255)                                                                                                                                   ccgGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCGGTCgt               >  7:53623/1‑149 (MQ=255)                                                                                                                                          gtcggccggcACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCGGTCGTGTTGCCg        <  3:172541‑M2/139‑1 (MQ=255)                                                                                                                                            ccgccgGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCGGTCGTGTTGCCgg       >  2:289236/1‑148 (MQ=255)                                                                                                                                              gccggcACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCGGTCGTGTTGCCGGCAc    <  5:186931‑M2/143‑1 (MQ=255)                                                                                                                                                cggcACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCAAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCGGTCGTGTTGCCGGCACTc  <  4:249544‑M2/145‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGCGACCCGGCATCGAAAGACCCGGTCGTGTTGCCGGCACTC  >  NC_002947/3443458‑3443749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.