New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3625930 =	39 (0.720)	3 (0.060)	3/254	NT	7.3%	coding (573/939 nt)	PP_3196	nodulation protein d1
	?	NC_002947	3625996 =	39 (0.750)					coding (507/939 nt)	PP_3196	nodulation protein d1

GTACGGTGCCCACCAACAACTGGGGCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGC  >  NC_002947/3625782‑3626077                                                                                                                                                     |                                                                                                                                                    gTACGGTGCCCACCAACAACTGGGGCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGc                                                                                                                                                     <  5:291364/149‑1 (MQ=255)  tACGGTGCCCACCAACAACTGGGGCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCa                                                                                                                                                    <  7:68392/149‑1 (MQ=255)    cGGTGCCCACCAACAACTGGGGCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCAt                                                                                                                                                   <  8:46477/148‑1 (MQ=255)     gaggcgccgcagattaccttcgagatgatcggcccaggcgacagtagcgacgaattgctgatgcgcggcgaggtcgacatgatgatcgtgcccgagcgctatctcatcgagggccatccggcgcagctgctgttcgaggaagatCATg                                                                                                                                                  <  7:193377‑M1/4‑1 (MQ=255)           caccaACAACTGGGGCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCGATCTGCATGTACTGCt                                                                                                                                           >  6:303007/1‑149 (MQ=255)                    cTGGGGCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCa                                                                                                                                  <  3:210116/149‑1 (MQ=255)                    cTGGGGCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCa                                                                                                                                  <  4:203244/149‑1 (MQ=255)                    cTGGGGCAGGGTGTTGAAGTCGTTGATGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAgt                                                                                                                                      <  4:297286/145‑1 (MQ=255)                    cTGGGGCAGGGTGTTGAAGTCGTTGATGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAgt                                                                                                                                      >  3:297286/1‑145 (MQ=255)                      tgggCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGa                                                                                                                                <  3:111775/148‑1 (MQ=255)                             ggTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTa                                                                                                                                                <  1:105415/126‑1 (MQ=255)                             ggTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCAGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCTGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTa                                                                                                                                                >  2:105415/1‑126 (MQ=255)                              gtgtTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGcc                                                                                                                        >  4:304681/1‑149 (MQ=255)                                  tGAAGTCGTTGGTGATGACTTCCAGCCTCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCAc                                                                                                                     <  8:183973/148‑1 (MQ=255)                                      gTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGCTTGCGGCCAAAGCCTACCAAGATGTGGACCATCTGCATGTACAGCTCAACAGTCAGATGCTCGCACACCTCgg                                                                                                                >  2:299246/1‑149 (MQ=255)                                          ttGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGtt                                                                                                            <  5:303007/149‑1 (MQ=255)                                                 tgaCTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCgcgc                                                                                                     <  1:218384/149‑1 (MQ=255)                                                        cAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCAcacca                                                                                              >  8:58496/1‑149 (MQ=255)                                                           ttgctgatgcgcggcgaggtcgacatgatgatcgtgcccgagcgctatctcatcgagggccatccggcgcagctgctgttcgaggaagatCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACg                                                                                            <  6:86162‑M1/58‑1 (MQ=255)                                                             gccgATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACg                                                                                            >  7:15905/1‑146 (MQ=255)                                                                gATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACa                                                                                      <  3:311935/149‑1 (MQ=255)                                                                     aaGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCca                                                                                                   >  4:130005/1‑131 (MQ=255)                                                                     aaGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCca                                                                                                   <  3:130005/131‑1 (MQ=255)                                                                     aaGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATc                                                                                 <  7:58496/149‑1 (MQ=255)                                                                     aaGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATc                                                                                 >  8:280316/1‑149 (MQ=255)                                                                      aGCCGTACTTGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTTTCAGATTCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCt                                                                                <  1:299246/149‑1 (MQ=255)                                                                      aGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCt                                                                                >  1:24768/1‑149 (MQ=255)                                                                        ccGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTc                                                                              <  1:165024/149‑1 (MQ=255)                                                                         cgaggtcgacatgatgatcgtgcccgagcgctatctcatcgagggccatccggcgcagctgctgttcgaggaagatCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTcc                                                                             >  5:86162‑M1/77‑149 (MQ=255)                                                                         cGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTcc                                                                             >  2:36266/1‑149 (MQ=255)                                                                         cGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTcc                                                                             <  1:36266/149‑1 (MQ=255)                                                                          gTACTGGTTCATGAACCAGTCGTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCGATCTGCATGTACTGCTc                                                                                                                                          <  7:316897/87‑1 (MQ=255)                                                                                gTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAAca                                                                      <  7:280316/149‑1 (MQ=255)                                                                                        aCCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTgc                                                              <  7:200695/149‑1 (MQ=255)                                                                                               cTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGAt                                                       >  1:132447/1‑149 (MQ=255)                                                                                                ccgagcgctatctcatcgagggccatccggcgcagctgctgttcgaggaagatCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCtt                                                                               <  6:307614‑M1/71‑1 (MQ=255)                                                                                                       tCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTc                                                >  1:262039/1‑148 (MQ=255)                                                                                                           gTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATga                                           <  2:24768/149‑1 (MQ=255)                                                                                                            tGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGAt                                             >  3:282068/1‑146 (MQ=255)                                                                                                            tGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATgag                                          <  3:304681/149‑1 (MQ=255)                                                                                                                 gTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAgc                                     <  2:262039/149‑1 (MQ=255)                                                                                                                  ttGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAgcg                                    >  8:59989/1‑149 (MQ=255)                                                                                                                       gCCAAAGCCTACCGAGATGTGGCCCATCTGCATGCACTGCTCAAGTGTCAGATGCTCTCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCgg                               <  7:163854/149‑1 (MQ=255)                                                                                                                                 aCCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGatcat                     >  2:76673/1‑149 (MQ=255)                                                                                                                                              ccATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTcg        >  1:192615/1‑149 (MQ=255)                                                                                                                                               cATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTcgc       >  4:16587/1‑149 (MQ=255)                                                                                                                                                    gCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCcgcg   >  7:29334/1‑148 (MQ=255)                                                                                                                                                     CATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCgcgc  >  8:15905‑M1/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GTACGGTGCCCACCAACAACTGGGGCAGGGTGTTGAAGTCGTTGGTGATGACTTCCAGCCGCCGATTGAAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGC  >  NC_002947/3625782‑3626077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.