New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3625930 =	39 (0.720)	3 (0.060)	3/254	NT	7.3%	coding (573/939 nt)	PP_3196	nodulation protein d1
	?	NC_002947	3625996 =	39 (0.750)					coding (507/939 nt)	PP_3196	nodulation protein d1

AAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCTGGGCCGATCATCTCGAAGGTAATCTGCGGCGCCTC  >  NC_002947/3625850‑3626139                                                                                                                                                   |                                                                                                                                                aaGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATc                                                                                                                                               >  8:280316/1‑149 (MQ=255) aaGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATc                                                                                                                                               <  7:58496/149‑1 (MQ=255)  aGCCGTACTTGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTTTCAGATTCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCt                                                                                                                                              <  1:299246/149‑1 (MQ=255)  aGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCt                                                                                                                                              >  1:24768/1‑149 (MQ=255)    ccGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTc                                                                                                                                            <  1:165024/149‑1 (MQ=255)     cgaggtcgacatgatgatcgtgcccgagcgctatctcatcgagggccatccggcgcagctgctgttcgaggaagatCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTcc                                                                                                                                           >  5:86162‑M1/77‑149 (MQ=255)     cGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTcc                                                                                                                                           >  2:36266/1‑149 (MQ=255)     cGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTcc                                                                                                                                           <  1:36266/149‑1 (MQ=255)            gTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAAca                                                                                                                                    <  7:280316/149‑1 (MQ=255)                    aCCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTgc                                                                                                                            <  7:200695/149‑1 (MQ=255)                           cTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGAt                                                                                                                     >  1:132447/1‑149 (MQ=255)                            ccgagcgctatctcatcgagggccatccggcgcagctgctgttcgaggaagatCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCtt                                                                                                                                             <  6:307614‑M1/71‑1 (MQ=255)                                   tCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTc                                                                                                              >  1:262039/1‑148 (MQ=255)                                       gTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATga                                                                                                         <  2:24768/149‑1 (MQ=255)                                        tGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGAt                                                                                                           >  3:282068/1‑146 (MQ=255)                                        tGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATgag                                                                                                        <  3:304681/149‑1 (MQ=255)                                             gTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAgc                                                                                                   <  2:262039/149‑1 (MQ=255)                                              ttGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAgcg                                                                                                  >  8:59989/1‑149 (MQ=255)                                                   gCCAAAGCCTACCGAGATGTGGCCCATCTGCATGCACTGCTCAAGTGTCAGATGCTCTCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCgg                                                                                             <  7:163854/149‑1 (MQ=255)                                                             aCCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGatcat                                                                                   >  2:76673/1‑149 (MQ=255)                                                                          ggaagatcatgtctgcgtggtgtggcgcgacaaccccgaggtgggcgagcatctgacacttgagcagtacatgATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTcg                                                                      >  5:86162‑M2/74‑149 (MQ=255)                                                                          ccATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTcg                                                                      >  1:192615/1‑149 (MQ=255)                                                                           cATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTcgc                                                                     >  4:16587/1‑149 (MQ=255)                                                                            aagatcatgtctgcgtggtgtggcgcgacaaccccgaggtgggcgagcatctgacacttgagcagtacatgATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCgg                                                                                             <  6:307614‑M2/53‑1 (MQ=255)                                                                                gCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCcgcg                                                                 >  7:29334/1‑148 (MQ=255)                                                                                 CATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCgcgc                                                                >  8:15905‑M1/1‑148 (MQ=255)                                                                                    GTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCAt                                                              <  8:127100‑M1/147‑1 (MQ=255)                                                                                         cgtggtgtggcgcgacaaccccgaggtgggcgagcatctgacacttgagcagtacatgATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCaa                                                        <  6:86162‑M2/90‑1 (MQ=255)                                                                                           tCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTAGCGCCACACAACGCAGACATGATCTTCATCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGCCATCGCCGCGCATCAGCAATTc                                                     >  4:112066/1‑149 (MQ=255)                                                                                           acAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACAACGCAGACATGATATTCCTAGAACAGCAGCTGCGCCGGATGGCCCTCCATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTc                                                     >  3:132950/2‑149 (MQ=255)                                                                                             aaGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCgg                                                   >  3:111432/1‑149 (MQ=255)                                                                                              aGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGgc                                                  <  2:192615/149‑1 (MQ=255)                                                                                              aGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGgc                                                  >  2:20666/1‑149 (MQ=255)                                                                                                     gATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTg                                           >  8:193377/1‑149 (MQ=255)                                                                                                        gCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGat                                                                                      >  6:225761/1‑103 (MQ=255)                                                                                                        gCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGat                                                                                      <  5:225761/103‑1 (MQ=255)                                                                                                        gCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCg                                        >  4:196685/1‑149 (MQ=255)                                                                                                          tCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGcc                                      >  2:63196/1‑149 (MQ=255)                                                                                                          tCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGAGCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGcc                                      >  3:215/1‑149 (MQ=255)                                                                                                           cGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCt                                     >  7:109348/1‑149 (MQ=255)                                                                                                               cACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCTGGGc                                 <  8:29334/149‑1 (MQ=255)                                                                                                                  cTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCTGGGCCGa                              >  1:200519/1‑149 (MQ=255)                                                                                                                     ggggTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTg                                           >  7:256833/1‑133 (MQ=255)                                                                                                                     ggggTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTg                                           <  8:256833/133‑1 (MQ=255)                                                                                                                      gggTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGc                                       >  4:315182/1‑136 (MQ=255)                                                                                                                      gggTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGc                                       <  3:315182/136‑1 (MQ=255)                                                                                                                            tCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCTGGGCCGATCATCTCGaa                    <  1:76673/149‑1 (MQ=255)                                                                                                                            tCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCTGGGCCGATCATCTCGa                     <  1:20666/148‑1 (MQ=255)                                                                                                                                gcCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCACCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCTGGGCCGa                              >  7:177783/1‑135 (MQ=255)                                                                                                                                gcCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCACCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCTGGGCCGa                              <  8:177783/135‑1 (MQ=255)                                                                                                                                               catgATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGTCGCTACTGTCGCCTGGGCCGATCATCTCGAAGGTAATCTGCGGCGcctc  <  7:193377‑M2/144‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                AAGCCGTACTGGTTCATGAACCAGTCCTCGATGCTCAAGTGACGGTTGCGGCCAAAGCCTACCGAGATGTGGCCCATCTGCATGTACTGCTCAAGTGTCAGATGCTCGCCCACCTCGGGGTTGTCGCGCCACACCACGCAGACATGATCTTCCTCGAACAGCAGCTGCGCCGGATGGCCCTCGATGAGATAGCGCTCGGGCACGATCATCATGTCGACCTCGCCGCGCATCAGCAATTCGGCGCTACTGTCGCCTGGGCCGATCATCTCGAAGGTAATCTGCGGCGCCTC  >  NC_002947/3625850‑3626139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.