New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3643273 | 46 (0.850) | 3 (0.060) | 3/250 | NT | 6.4% | coding (774/804 nt) | PP_3210 | ABC transporter permease |
? | NC_002947 | = 3643310 | 44 (0.860) | coding (737/804 nt) | PP_3210 | ABC transporter permease |
GCGCGCGGCGCCGCCGCGCAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCC > NC_002947/3643130‑3643420 | gcgcgcGGCGCCGCCGCGCAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCt > 2:265683/1‑149 (MQ=255) cgcgcgGCGCCGCCGCGCAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTc < 6:227704/149‑1 (MQ=255) gcggcgCCGCCGCGCAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAAc > 4:162334/1‑149 (MQ=255) gcgcCGCCGCGCAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAAcc > 4:120033/1‑147 (MQ=255) gccgccgcGCAGGCCAGTGAGGATGGTGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGc > 1:250784/1‑149 (MQ=255) ccgccgcGGAGGCCAGTGAGGAGGGCGCTGGCGTTACGGATCAGGCCGCGGTGGGGGGGATTCAGGTGCGTCTCCATAGCCAGTACGGCGGTTCGCATGGACGTCCGCCCAGTGCGCGTTCGTGCCAGTGGCGCAGGCTCTACCGCGcc > 8:131528/1‑149 (MQ=255) cgccgcGCAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCa < 1:288713/149‑1 (MQ=255) cgccgcGCAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCa < 4:8147/149‑1 (MQ=255) cgcAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCaaa < 1:265683/149‑1 (MQ=255) ggCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCa > 3:310995/1‑149 (MQ=255) cAGTGAGGATGGCGCTCGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCAt > 3:116102/1‑147 (MQ=255) gTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAgg > 5:160791/1‑149 (MQ=255) tGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGc > 8:227175/1‑149 (MQ=255) tGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTCGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGc > 1:115811/1‑149 (MQ=255) gATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGACTGaa > 8:316298/1‑149 (MQ=255) tGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACa < 7:227175/149‑1 (MQ=255) gCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCtgttcagcctgatggctttgctggctcggttgagcctgcgccact < 1:91167‑M1/149‑46 (MQ=255) gCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAgcgccac > 3:162334‑M2/1‑141 (MQ=255) gCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacg > 7:314060/1‑149 (MQ=255) cGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacgc < 7:131528/149‑1 (MQ=255) ttACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacgcca < 2:87135/149‑1 (MQ=255) ttACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacgc > 3:178528/1‑147 (MQ=255) tACGGAGCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacgcca < 8:97623/148‑1 (MQ=255) gATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAg < 2:250784/149‑1 (MQ=255) agccagcTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCtgttcagcctgatggctttgctggctcggttgagcctgcgccactg < 1:222121‑M1/138‑47 (MQ=255) agccagcTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCtgttcagcctgatggctttgctggctcggttgagcctgcgccactg > 2:222121‑M1/1‑92 (MQ=255) ccagcTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGAt < 6:160791/149‑1 (MQ=255) cagcTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGAt > 5:148848/1‑148 (MQ=255) cagcTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATc < 3:120033/149‑1 (MQ=255) cTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAac < 1:204261/149‑1 (MQ=255) aTGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGTATTAACATAGATACGCCAGTCAGGGAGATCAACACCAGGGCGGCGAAt < 4:310995/149‑1 (MQ=255) aTGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGaa > 2:75971/1‑148 (MQ=255) gTCTCCATAGCCAGTACGGCGTTTCGCATGCAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCgg > 1:27036/1‑149 (MQ=255) cctAGCCACTACGGGGTTTCGCATGGTAGTCATCACAGTTCGGTTTCGTGCCAGTGGCGCAGGTTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGa < 7:206777/146‑1 (MQ=255) cATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGAt > 7:257671/1‑149 (MQ=255) cATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAACCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGAt < 5:128538/149‑1 (MQ=255) tttCGCATGGAAGGCAGCCCAGTTCCCTTTCGTGCCAGTGGCGCAGGCTCAACCTAGCCAGCAAAGCCATCAGGCTTAACAGCGCCACGCCAGTCTGGGGGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATccc < 1:75971/149‑1 (MQ=255) tCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGc > 2:197733/1‑149 (MQ=255) aTGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGc < 8:314060/149‑1 (MQ=255) tCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCt < 2:184347/149‑1 (MQ=255) cAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTg < 8:257671/149‑1 (MQ=255) aGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGa > 5:166452/1‑149 (MQ=255) aGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGa > 2:133065/1‑149 (MQ=255) aGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGa < 1:197733/149‑1 (MQ=255) gCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGAt < 6:148848/149‑1 (MQ=255) gCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAacac < 4:42164/84‑1 (MQ=255) gCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAacac > 3:42164/1‑84 (MQ=255) tttCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATa < 6:156990/139‑1 (MQ=255) tttCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATa > 5:156990/1‑139 (MQ=255) gTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCAc > 1:148728/1‑149 (MQ=255) cAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAgcgccactggcacgaaagcgaactgggctgacttccatgcgaaacgccgtactggctatggagacgaacatgaatcacaccaacagctggct < 1:222121‑M2/138‑93 (MQ=255) cAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAgcgccactggcacgaaagcgaactgggctgacttccatgcgaaacgccgtactggctatggagacgaacatgaatcacaccaacagctggct > 2:222121‑M2/1‑46 (MQ=255) aGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAgcgccactggcacgaaagcgaactgggctgacttccatgcgaaacgccgtactggctatggagacgaacatgaatcacaccaacagctggctgatccgtaacgc < 1:91167‑M2/149‑105 (MQ=255) gTGGCGCtgttcagcctgatggctttgctggctcggttgagcctgcgccactggcacgaaagcgaactgggctgacttccatgcgaaacgccgtactggctatggagacgaacatgaatcacaccaacagctggctgatccgtaacgc > 3:162334‑M1/1‑7 (MQ=255) gTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTgc < 3:170206/149‑1 (MQ=255) gcAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGccc < 6:166452/149‑1 (MQ=255) | GCGCGCGGCGCCGCCGCGCAGGCCAGTGAGGATGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCC > NC_002947/3643130‑3643420 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |