New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3643273	46 (0.850)	3 (0.060)	3/250	NT	6.4%	coding (774/804 nt)	PP_3210	ABC transporter permease
	?	NC_002947	= 3643310	44 (0.860)					coding (737/804 nt)	PP_3210	ABC transporter permease

TGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCC  >  NC_002947/3643162‑3643452                                                                                                                                                     |                                                                                                                                               tGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACa                                                                                                                                                <  7:227175/149‑1 (MQ=255)         gCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAgcgccac                                                                                                                                         >  3:162334‑M2/1‑141 (MQ=255)         gCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacg                                                                                                                                        >  7:314060/1‑149 (MQ=255)          cGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacgc                                                                                                                                       <  7:131528/149‑1 (MQ=255)            ttACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacgcca                                                                                                                                     <  2:87135/149‑1 (MQ=255)            ttACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacgc                                                                                                                                       >  3:178528/1‑147 (MQ=255)             tACGGAGCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGcgccacgcca                                                                                                                                     <  8:97623/148‑1 (MQ=255)                 gATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAg                                                                                                                                <  2:250784/149‑1 (MQ=255)                       ccagcTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGAt                                                                                                                          <  6:160791/149‑1 (MQ=255)                        cagcTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGAt                                                                                                                          >  5:148848/1‑148 (MQ=255)                        cagcTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATc                                                                                                                         <  3:120033/149‑1 (MQ=255)                           cTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAac                                                                                                                      <  1:204261/149‑1 (MQ=255)                                          aTGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGTATTAACATAGATACGCCAGTCAGGGAGATCAACACCAGGGCGGCGAAt                                                                                                       <  4:310995/149‑1 (MQ=255)                                          aTGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGaa                                                                                                        >  2:75971/1‑148 (MQ=255)                                                gTCTCCATAGCCAGTACGGCGTTTCGCATGCAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCgg                                                                                                 >  1:27036/1‑149 (MQ=255)                                                     cctAGCCACTACGGGGTTTCGCATGGTAGTCATCACAGTTCGGTTTCGTGCCAGTGGCGCAGGTTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGa                                                                                             <  7:206777/146‑1 (MQ=255)                                                     cATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGAt                                                                                            >  7:257671/1‑149 (MQ=255)                                                     cATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAACCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGAt                                                                                            <  5:128538/149‑1 (MQ=255)                                                                     tttCGCATGGAAGGCAGCCCAGTTCCCTTTCGTGCCAGTGGCGCAGGCTCAACCTAGCCAGCAAAGCCATCAGGCTTAACAGCGCCACGCCAGTCTGGGGGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATccc                                                                            <  1:75971/149‑1 (MQ=255)                                                                       tCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGc                                                                          >  2:197733/1‑149 (MQ=255)                                                                           aTGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGc                                                                      <  8:314060/149‑1 (MQ=255)                                                                                  tCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCt                                                               <  2:184347/149‑1 (MQ=255)                                                                                   cAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTg                                                              <  8:257671/149‑1 (MQ=255)                                                                                    aGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGa                                                             <  1:197733/149‑1 (MQ=255)                                                                                    aGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGa                                                             >  2:133065/1‑149 (MQ=255)                                                                                    aGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGa                                                             >  5:166452/1‑149 (MQ=255)                                                                                     gCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGAt                                                            <  6:148848/149‑1 (MQ=255)                                                                                              gCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAacac                                                                                                                    >  3:42164/1‑84 (MQ=255)                                                                                              gCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAacac                                                                                                                    <  4:42164/84‑1 (MQ=255)                                                                                                tttCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATa                                                           <  6:156990/139‑1 (MQ=255)                                                                                                tttCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATa                                                           >  5:156990/1‑139 (MQ=255)                                                                                                    gTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCAc                                             >  1:148728/1‑149 (MQ=255)                                                                                                        cAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAgcgccactggcacgaaagcgaactgggctgacttccatgcgaaacgccgtactggctatggagacgaacatgaatcacaccaacagctggct                                                    >  2:222121‑M2/1‑46 (MQ=255)                                                                                                        cAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAgcgccactggcacgaaagcgaactgggctgacttccatgcgaaacgccgtactggctatggagacgaacatgaatcacaccaacagctggct                                                    <  1:222121‑M2/138‑93 (MQ=255)                                                                                                         aGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAgcgccactggcacgaaagcgaactgggctgacttccatgcgaaacgccgtactggctatggagacgaacatgaatcacaccaacagctggctgatccgtaacgc                                        <  1:91167‑M2/149‑105 (MQ=255)                                                                                                          gTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTgc                                       <  3:170206/149‑1 (MQ=255)                                                                                                               gcAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGccc                                  <  6:166452/149‑1 (MQ=255)                                                                                                                   gCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGcc                                                  <  7:14827/129‑1 (MQ=255)                                                                                                                   gCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGcc                                                  >  8:14827/1‑129 (MQ=255)                                                                                                                   gCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTAc                              >  4:83489/1‑149 (MQ=255)                                                                                                                   gCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTAc                              <  4:116102/149‑1 (MQ=255)                                                                                                                       aaCCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGc                          >  1:104302/1‑149 (MQ=255)                                                                                                                         ccGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGtt                                                                                         >  2:22509/1‑84 (MQ=255)                                                                                                                         ccGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGtt                                                                                         <  1:22509/84‑1 (MQ=255)                                                                                                                          cGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGcgac                       <  6:249844/149‑1 (MQ=255)                                                                                                                                  cAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCgg               >  5:46904/1‑149 (MQ=255)                                                                                                                                   aaaGCCATCAGGCTGAACAGCGCCACGCCTGTCAGGGCGATCAACACCAGGGCGGCGAATACGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCgg               <  7:316298/148‑1 (MQ=255)                                                                                                                                       ccATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGccac           >  3:150949/1‑148 (MQ=255)                                                                                                                                         aTCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCTCCCGTACCGGCGACGAACTCgg               <  8:219265/142‑1 (MQ=255)                                                                                                                                         aTCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCCCCCGTACCGGCGACGAACTCgg               >  7:219265/1‑142 (MQ=255)                                                                                                                                             ggCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGAACCGGCGACGAACTCGGCCACCACcgcg    >  3:136083/1‑149 (MQ=255)                                                                                                                                              gCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCgcgc   >  6:91288/1‑149 (MQ=255)                                                                                                                                                tGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGcc  >  2:187157/1‑148 (MQ=255)                                                                                                                                                tGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGcc  >  4:221840/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                               TGGCGCTGGCGTTACGGATCAGCCAGCTGTTGGTGTGATTCATGTTCGTCTCCATAGCCAGTACGGCGTTTCGCATGGAAGTCAGCCCAGTTCGCTTTCGTGCCAGTGGCGCAGGCTCAACCGAGCCAGCAAAGCCATCAGGCTGAACAGCGCCACGCCAGTCAGGGCGATCAACACCAGGGCGGCGAATAGGCGGGGGATGTTGAGCTGGAATCCCGCTTGCAGGATCTGATACGCCAGGCCCGCACCCGTGCCGCCCGTACCGGCGACGAACTCGGCCACCACCGCGCC  >  NC_002947/3643162‑3643452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.