New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3747583	39 (0.720)	3 (0.060)	3/248	NT	6.8%	coding (1178/1746 nt)	kefB‑II	glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	= 3747640	46 (0.910)					coding (1121/1746 nt)	kefB‑II	glutathione‑regulated potassium/H+ antiporter

CCTCGGGGTCCATGTCGATGATTGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCAGCGCTTCGGTAAACAGCACAAACG  >  NC_002947/3747446‑3747730                                                                                                                                          |                                                                                                                                                    ccTCGGGGTCCATGTCGATGATTGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCgg                                                                                                                                          >  5:269271/1‑149 (MQ=255) ccTCGGGGTCCATGTCGATGATTGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCgg                                                                                                                                          >  6:235824/1‑149 (MQ=255)         tCCATGTCGATGATTGAAAGGTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCGGACACGGCCAAACCCTATGATGAGTTCATGGCGTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCcgcgc                                                                                                                                  <  1:121559/149‑1 (MQ=255)               tagatgatTGAAAGCTAGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCCGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACg                                                                                                                            >  6:157588/3‑149 (MQ=255)               tCGATGATTGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAAc                                                                                                                             <  1:154543/148‑1 (MQ=255)               tCGATGATTGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACg                                                                                                                            >  2:144632/1‑149 (MQ=255)                  atgatTGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCtt                                                                                                                         <  5:235824/149‑1 (MQ=255)                     atTGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGa                                                                                                                       <  3:117012/148‑1 (MQ=255)                      ttGAAAGCTTGTCGACATGAGCGAGCGGTGACTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGc                                                                                                                     <  8:121719/149‑1 (MQ=255)                      ttGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGccctcacgccggtgaaccttctgttgctcaag                                                                                                                     >  7:229493‑M1/1‑117 (MQ=255)                                         agcgagcgGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCAc                                                                                                       <  8:19782/144‑1 (MQ=255)                                         agcgagcgGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCAc                                                                                                       >  7:19782/1‑144 (MQ=255)                                         agcgagcgGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGc                                                                                                   <  2:81020/148‑1 (MQ=255)                                          gcgagcgGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGt                                                                                                 >  3:130612/1‑149 (MQ=255)                                           cgagcgGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGccctcacgccggtgaaccttctgttgctcaagcgtttcgcgcggccccgggcg                                                                                                <  8:229493‑M1/149‑54 (MQ=255)                                                    ccTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGccatg                                                                                       >  1:138165‑M2/1‑144 (MQ=255)                                                    ccTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGccatg                                                                                       >  4:130612‑M2/1‑144 (MQ=255)                                                       gACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGa                                                                                               <  4:27173/138‑1 (MQ=255)                                                       gACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGa                                                                                               >  3:27173/1‑138 (MQ=255)                                                          aaGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGTCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGccctcacgccggtgaaccttctgttgctcaagcgtttcgcgcggccccgggcggtttccatggacggt                                                                                 <  7:80479‑M1/149‑69 (MQ=255)                                                              gATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGcacca                                                                             >  5:76039/1‑149 (MQ=255)                                                                   ggCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGa                                                                          >  4:191212/1‑147 (MQ=255)                                                                    gCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGcacca                                                                             <  8:306550/143‑1 (MQ=255)                                                                           cGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCAt                                                                <  1:144632/149‑1 (MQ=255)                                                                           cGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCAt                                                                <  5:157588/149‑1 (MQ=255)                                                                                    ccTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATa                                                                        <  2:270027/132‑1 (MQ=255)                                                                                    ccTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATa                                                                        >  1:270027/1‑132 (MQ=255)                                                                                           tgaGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCg                                                >  2:73430/1‑149 (MQ=255)                                                                                           tgaGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCg                                                <  2:336421/149‑1 (MQ=255)                                                                                                  aTGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCCTGAGGGCCATGGACAGCACCACCATAGACGGCAGGTTGGCGTTGATGTCGGCACTga                                         >  8:242244/1‑149 (MQ=255)                                                                                                        ttGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCt                                   >  2:246582/1‑149 (MQ=255)                                                                                                           gagaTTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTTAGCAACAGAAGGTTCACCTGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGa                                <  1:40276/149‑1 (MQ=255)                                                                                                           gagaTTCTGTGCCGGCGCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGa                                <  6:76039/149‑1 (MQ=255)                                                                                                            agaTTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCCTGAg                               <  3:191212/149‑1 (MQ=255)                                                                                                             gaTTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGt                              >  8:184629/1‑149 (MQ=255)                                                                                                               ttCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGttt                            >  1:243517/1‑149 (MQ=255)                                                                                                                    tgCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCa                          <  2:243517/146‑1 (MQ=255)                                                                                                                       cGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCAGCGCtt                    >  8:55968/1‑149 (MQ=255)                                                                                                                         gCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCAGCGCTTCg                  <  6:269271/149‑1 (MQ=255)                                                                                                                              acacCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCGGTCATGTTGGCGTTGATTTCGGCACTGACGAACtt                                  >  2:57024/1‑128 (MQ=255)                                                                                                                              acacCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCAGCGCTTCGGTaaa             >  8:15326/1‑149 (MQ=255)                                                                                                                                acCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGccatggacggtgtggagccggcacagaatctccaagaccatgtactcatcatagggtttggccgtgtcggccagatcgctt           <  7:80479‑M2/149‑82 (MQ=255)                                                                                                                                acCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCg                                                <  8:92138/112‑1 (MQ=255)                                                                                                                                acCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCg                                                >  7:92138/1‑112 (MQ=255)                                                                                                                                   gtacATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGAAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCTTTGATTTAGGCACTGACGACCTTGAGTTTCAGCGATTCGGTAAACAgaa        >  4:253879/4‑147 (MQ=255)                                                                                                                                    tCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCAGCGCTTCGGTAAACAGcac       <  4:2634/149‑1 (MQ=255)                                                                                                                                      cATGGccctcacgccggtgaaccttctgttgctcaagcgtttcgcgcggccccgggcggtttccatggacggtgtggagccggcacagaatctccaaggccatgtactcatcatagggtttggccgtgtcggccagatcgcttgtcagg     >  4:130612‑M1/1‑5 (MQ=255)                                                                                                                                      cATGGccctcacgccggtgaaccttctgttgctcaagcgtttcgcgcggccccgggcggtttccatggacggtgtggagccggcacagaatctccaaggccatgtactcatcatagggtttggccgtgtcggccagatcgcttgtcagg     >  1:138165‑M1/1‑5 (MQ=255)                                                                                                                                         ggAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCAGCGCTTCGGTAAACAGCACAAACg  >  6:113685/1‑149 (MQ=255)                                                                                                                                         ggAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCAGCGCTTCGGTAAACAGCACAAACg  >  3:288656/1‑149 (MQ=255)                                                                                                                                          gAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGGTGGCGTTGATTTCGGCCCTGACGCCCTTGAGTTTCAGCGCTTCGGTAAACAGCACAAACg  >  6:93152/1‑148 (MQ=255)                                                                                                                                          |                                                                                                                                                    CCTCGGGGTCCATGTCGATGATTGAAAGCTTGGCGCCATGAGCGAGCGGTGCCTGACAAGCGATCTGGCCGACACGGCCAAACCCTATGATGAGTACATGGCCTTGGAGATTCTGTGCCGGCTCCACACCGTCCATGGAAACCGCCCGGGGCCGCGCGAAACGCTTGAGCAACAGAAGGTTCACCGGCGTGAGGGCCATGGACAGCACCACGATAGCCGTCATGTTGGCGTTGATTTCGGCACTGACGACCTTGAGTTTCAGCGCTTCGGTAAACAGCACAAACG  >  NC_002947/3747446‑3747730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.