New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4030015 =	41 (0.760)	4 (0.080)	4/256	NT	9.2%	coding (1393/1623 nt)	PP_3553	AMP‑binding domain‑containing protein
	?	NC_002947	4030072 =	39 (0.750)					coding (1450/1623 nt)	PP_3553	AMP‑binding domain‑containing protein

GGTTCCACACCGGCGACCTGGCCGTGTGGCATGCCGACGGCTATATCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGAC  >  NC_002947/4029869‑4030163                                                                                                                                                   |                                                                                                                                                     acgtacttctggatcttgccggtcgaggtcttgggcagctcgccgaacaccacggtcttcggcaccttgaacccggccaggtgctcgcggcaccaactggtgatgtcggcttcacgggtgtcctcccggcctggctttaagtcaacGaa                                                                                                                                                    >  4:247650‑M1/147‑149 (MQ=255)    tCCACACCGGCGACCTGGCCGTGTGGCATGCCGACGGCTATATCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGCAgcc                                                                                                                                                 >  4:46609/1‑149 (MQ=255)       acacCGGCGACCTGGCCGTGTGGAATGCCGACGGCTATATCGAGAACAAGGACCGGCTCAAGCACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCCAGGTCGAAGACGACCTGAACACGCACTCGGCAGTACTGGAAgcagcc                                                                                                                                              >  4:82976/1‑149 (MQ=255)         acCGGCGACCTGGCCGTGTGGCATGCCGACGGCTATATCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCgt                                                                                                                                            >  1:63416/1‑149 (MQ=255)             gCGACCTGGCCGTGTGGCATGCCGACGGCTATATCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCgtggtg                                                                                                                                        <  8:132533/149‑1 (MQ=255)             gCGACCTGGCCGTGTGGCATGCCGACGGCTATATCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCgtggtg                                                                                                                                        <  2:120359/149‑1 (MQ=255)                                  ccGACGGCTATATCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATg                                                                                                                    <  8:155250/148‑1 (MQ=255)                                    gACGGCTATATCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATgggg                                                                                                                 <  8:177204/149‑1 (MQ=255)                                          gccgaacaccacggtcttcggcaccttgaacccggccaggtgctcgcggcaccaactggtgatgtcggcttcacgggtgtcctcccggcctggctttaaggcaacGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAAc                                                                                                           <  1:317660‑M1/44‑1 (MQ=255)                                              tCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGAGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCg                                                                                                       >  7:28933/1‑149 (MQ=255)                                                      ggtcttcggcaccttgaacccggccaggtgctcgcggcaccaactggtgatgtcggcttcacgggtgtcctcccggcctggctttaaggcaacGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCtt                                                                                               >  2:140734‑M1/94‑149 (MQ=255)                                                      aaGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCtt                                                                                               >  7:310661/1‑149 (MQ=255)                                                       gtcttcggcaccttgaacccggccaggtgctcgcggcaccaactggtgatgtcggcttcacgggtgtcctcccggcctggctttaaggcaacGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTc                                                                                              >  7:5783‑M1/93‑149 (MQ=255)                                                       aGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTc                                                                                              <  3:89896/149‑1 (MQ=255)                                                         gACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGt                                                                                            <  2:63416/149‑1 (MQ=255)                                                         gACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGt                                                                                            >  3:72161/1‑149 (MQ=255)                                                           ccGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGt                                                                                                      >  6:95238/1‑137 (MQ=255)                                                           ccGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGt                                                                                                      <  5:95238/137‑1 (MQ=255)                                                            cggcaccttgaacccggccaggtgctcgcggcaccaactggtgatgtcggcttcacgggtgtcctcccggcctggctttaaggcaacGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGt                                                                                            >  2:317660‑M1/88‑146 (MQ=255)                                                                  aaGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTaa                                                                                    <  1:43937/148‑1 (MQ=255)                                                                        atcatcatTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAgg                                                                             >  1:82936/1‑149 (MQ=255)                                                                          catcatTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGAACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGcc                                                                           >  8:239340/1‑149 (MQ=255)                                                                            tcatTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCTAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCACGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCgg                                                                         >  2:213754/1‑149 (MQ=255)                                                                              atTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAATCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGgga                                                                       <  3:82976/149‑1 (MQ=255)                                                                               tttCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAg                                                                              <  2:50711/141‑1 (MQ=255)                                                                               tttCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAg                                                                              >  1:50711/1‑141 (MQ=255)                                                                                  ccGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGTATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGggagga                                                                    <  6:153426/148‑1 (MQ=255)                                                                                        gCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGt                                                             <  8:28933/149‑1 (MQ=255)                                                                                          gagaACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTg                                                            >  5:90224/1‑148 (MQ=255)                                                                                             aaCATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGc                                                        <  3:141474/149‑1 (MQ=255)                                                                                              aCATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGcc                                                       <  1:213754/149‑1 (MQ=255)                                                                                                     caccaTCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGATGTTGAACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCa                                                >  5:236780/1‑149 (MQ=255)                                                                                                         aTCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAg                                            >  5:274107/1‑149 (MQ=255)                                                                                                            gAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGtt                                          <  2:82936/148‑1 (MQ=255)                                                                                                               gTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTg                                      >  1:197464/1‑149 (MQ=255)                                                                                                                  gAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTCGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCcg                                   >  1:308989/1‑149 (MQ=255)                                                                                                                      aCGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAg                               >  6:159438/1‑149 (MQ=255)                                                                                                                        gCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATCGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCAGGGAGGACACCCGGGAAGCCGACATCACCAGTTGGTGCCGCGAGcc                             >  8:305124/1‑148 (MQ=255)                                                                                                                          ccTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCAcc                           >  3:229548/1‑149 (MQ=255)                                                                                                                           cTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCTAc                                                    <  6:167397/123‑1 (MQ=255)                                                                                                                           cTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCt                          >  7:150306/1‑149 (MQ=255)                                                                                                                            tGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTg                         >  5:237470/1‑149 (MQ=255)                                                                                                                                 aaGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCgg                    <  3:46609/149‑1 (MQ=255)                                                                                                                                   gCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCCGGCCGGGt                  >  6:61650/1‑149 (MQ=255)                                                                                                                                         ggCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAg             <  5:159438/148‑1 (MQ=255)                                                                                                                                            aGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGc         <  5:36038/149‑1 (MQ=255)                                                                                                                                                cTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGt                                                             >  6:268372/1‑93 (MQ=255)                                                                                                                                                 tGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGa                                >  8:262291/1‑121 (MQ=255)                                                                                                                                                   GAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGAc  <  8:213757‑M1/149‑1 (MQ=255)                                                                                                                                                   GAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGAc  <  3:322894‑M1/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GGTTCCACACCGGCGACCTGGCCGTGTGGCATGCCGACGGCTATATCGAGATCAAGGACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGAC  >  NC_002947/4029869‑4030163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.