New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4030015 =	41 (0.760)	4 (0.080)	4/256	NT	9.2%	coding (1393/1623 nt)	PP_3553	AMP‑binding domain‑containing protein
	?	NC_002947	4030072 =	39 (0.750)					coding (1450/1623 nt)	PP_3553	AMP‑binding domain‑containing protein

GACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGATCCAGAAGTACGT  >  NC_002947/4029925‑4030217                                                                                                                                                    |                                                                                                                                                  gACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGt                                                                                                                                                  >  3:72161/1‑149 (MQ=255) gACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGt                                                                                                                                                  <  2:63416/149‑1 (MQ=255)    cggcaccttgaacccggccaggtgctcgcggcaccaactggtgatgtcggcttcacgggtgtcctcccggcctggctttaaggcaacGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGt                                                                                                                                                  >  2:317660‑M1/88‑146 (MQ=255)          aaGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTaa                                                                                                                                          <  1:43937/148‑1 (MQ=255)                atcatcatTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAgg                                                                                                                                   >  1:82936/1‑149 (MQ=255)                  catcatTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGAACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGcc                                                                                                                                 >  8:239340/1‑149 (MQ=255)                    tcatTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCTAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCACGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCgg                                                                                                                               >  2:213754/1‑149 (MQ=255)                      atTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAATCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGgga                                                                                                                             <  3:82976/149‑1 (MQ=255)                       tttCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAg                                                                                                                                    >  1:50711/1‑141 (MQ=255)                       tttCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAg                                                                                                                                    <  2:50711/141‑1 (MQ=255)                          ccGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGTATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGggagga                                                                                                                          <  6:153426/148‑1 (MQ=255)                                gCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGt                                                                                                                   <  8:28933/149‑1 (MQ=255)                                  gagaACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTg                                                                                                                  >  5:90224/1‑148 (MQ=255)                                     aaCATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGc                                                                                                              <  3:141474/149‑1 (MQ=255)                                      aCATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGcc                                                                                                             <  1:213754/149‑1 (MQ=255)                                             caccaTCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGATGTTGAACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCa                                                                                                      >  5:236780/1‑149 (MQ=255)                                                 aTCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAg                                                                                                  >  5:274107/1‑149 (MQ=255)                                                    gAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGtt                                                                                                <  2:82936/148‑1 (MQ=255)                                                       gTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTg                                                                                            >  1:197464/1‑149 (MQ=255)                                                          gAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTCGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCcg                                                                                         >  1:308989/1‑149 (MQ=255)                                                              aCGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAg                                                                                     >  6:159438/1‑149 (MQ=255)                                                                gCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATCGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCAGGGAGGACACCCGGGAAGCCGACATCACCAGTTGGTGCCGCGAGcc                                                                                   >  8:305124/1‑148 (MQ=255)                                                                  ccTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCAcc                                                                                 >  3:229548/1‑149 (MQ=255)                                                                   cTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCTAc                                                                                                          <  6:167397/123‑1 (MQ=255)                                                                   cTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCt                                                                                >  7:150306/1‑149 (MQ=255)                                                                    tGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTg                                                                               >  5:237470/1‑149 (MQ=255)                                                                         aaGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCgg                                                                          <  3:46609/149‑1 (MQ=255)                                                                           gCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCCGGCCGGGt                                                                        >  6:61650/1‑149 (MQ=255)                                                                                 ggCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAg                                                                   <  5:159438/148‑1 (MQ=255)                                                                                    aGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGc                                                               <  5:36038/149‑1 (MQ=255)                                                                                        cTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGt                                                                                                                   >  6:268372/1‑93 (MQ=255)                                                                                         tGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGa                                                                                      >  8:262291/1‑121 (MQ=255)                                                                                         acgaaggcgcacggggtttcgccccatttttcatccgggcgtgccaccacggcggcttcGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCg                                                             >  2:317660‑M2/60‑146 (MQ=255)                                                                                           gaaggcgcacggggtttcgccccatttttcatccgggcgtgccaccacggcggcttcGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGAc                                                        >  7:5783‑M2/58‑149 (MQ=255)                                                                                           GAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGAc                                                        <  8:213757‑M1/149‑1 (MQ=255)                                                                                           GAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGAc                                                        <  3:322894‑M1/149‑1 (MQ=255)                                                                                            aaggcgcacggggtttcgccccatttttcatccgggcgtgccaccacggcggcttcGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGAcc                                                       >  2:140734‑M2/57‑149 (MQ=255)                                                                                              GCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGt                                                     >  6:237470‑M1/1‑149 (MQ=255)                                                                                               ccgccgTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCgtg                                                    <  4:72161/149‑1 (MQ=255)                                                                                               ccgccgTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGACGAAGACCgtg                                                    <  6:90224/149‑1 (MQ=255)                                                                                                    gtggtgGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGtt                                               <  6:274107/149‑1 (MQ=255)                                                                                                      ggtggCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGt                                                                                             >  8:277015/1‑101 (MQ=255)                                                                                                        gtttcgccccatttttcatccgggcgtgccaccacggcggcttcGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGc                                           <  1:317660‑M2/105‑1 (MQ=255)                                                                                                          gCACGCTCGGATGAAAATTGGGGTGAAACCCAGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAACACCACGGTCTTCGGca                                          <  6:236780/148‑2 (MQ=255)                                                                                                          gCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGa                                         <  2:197464/149‑1 (MQ=255)                                                                                                                              ggccGAAACCCCGTGCGCCTTCGTTCCCTTAAAGCCAGCCCGGGAGGACACCCGGGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCATGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGAcc                      <  1:245808/145‑1 (MQ=255)                                                                                                                                  gAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCaa                 <  8:150306/149‑1 (MQ=255)                                                                                                                                    aaCCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGa               <  7:239340/149‑1 (MQ=255)                                                                                                                                      ccccGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGATc             <  7:213757/149‑1 (MQ=255)                                                                                                                                           tGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCCGGCCGGGTTCAAGGTGCCGAAGACCGCGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGATCCAGaa        <  5:61650/149‑1 (MQ=255)                                                                                                                                           tGCGCCTGCGTTGCCTTAAAGCCCGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACAGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGATCCAGaa        <  7:305124/149‑1 (MQ=255)                                                                                                                                              gcCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGATCCAGAAGTa     >  8:249690/1‑149 (MQ=255)                                                                                                                                              gcCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGATCCAGAAGTa     >  3:139031/1‑149 (MQ=255)                                                                                                                                                 ttcGTTGACTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGATCCAGAAGTACGt  >  4:247650‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GACCGGCTCAAGGACATCATCATTTCCGGTGGCGAGAACATCTCCACCATCGAGGTCGAAGACGCCCTGTACAAGCACTCGGCAGTACTGGAAGCCGCCGTGGTGGCACGCCCGGATGAAAAATGGGGCGAAACCCCGTGCGCCTTCGTTGCCTTAAAGCCAGGCCGGGAGGACACCCGTGAAGCCGACATCACCAGTTGGTGCCGCGAGCACCTGGCCGGGTTCAAGGTGCCGAAGACCGTGGTGTTCGGCGAGCTGCCCAAGACCTCGACCGGCAAGATCCAGAAGTACGT  >  NC_002947/4029925‑4030217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.