New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4479492 | 45 (0.840) | 3 (0.060) | 3/250 | NT | 6.5% | coding (843/1203 nt) | ybdR | Zn‑dependent oxidoreductase |
? | NC_002947 | = 4479512 | 44 (0.860) | coding (863/1203 nt) | ybdR | Zn‑dependent oxidoreductase |
GTCATCCCGATCAACTTCGAAAAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCA > NC_002947/4479346‑4479637 | gTCATCCCGATCAACTTCGAAAAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGcc > 3:178832‑M1/1‑147 (MQ=255) aTCCCGATCAACTTCGAAAAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAAc < 3:308302/148‑1 (MQ=255) tCCCGATCAACTTCGAAAAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTg > 2:116486/1‑149 (MQ=255) ccGATCAACTTCGAAAAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTgg < 4:188740/148‑1 (MQ=255) cTTCGAAAAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTag > 8:177554/1‑147 (MQ=255) cGAAAAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTagcagc < 3:225275/148‑1 (MQ=255) aaGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGcaa > 1:116486‑M2/1‑146 (MQ=255) aGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGcaag > 2:15690‑M2/1‑145 (MQ=255) gatgatgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGcaaggc < 4:138467‑M2/149‑7 (MQ=255) atgatgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGcaaggcc > 2:226775‑M2/1‑142 (MQ=255) gatgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCt > 5:82421/1‑149 (MQ=255) gatgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGAGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCt > 4:13831/1‑149 (MQ=255) tgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTgc < 2:97265/149‑1 (MQ=255) ccTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGccgctgctaccctccagtttcaaggccgtcatca < 4:178832‑M1/148‑35 (MQ=255) cTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCag < 8:302778/149‑1 (MQ=255) gACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCAt > 2:316375/1‑149 (MQ=255) atcatTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCAACGAAGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCATTTAATCTGGAGGGAAGCAGCGGCAAGC‑CCCTGCGCCAGAGCATCGCGGc > 1:195105/1‑149 (MQ=255) tcatTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCaga > 8:248627/1‑138 (MQ=255) tcatTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCaga < 7:248627/138‑1 (MQ=255) atTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCtgt < 1:316375/149‑1 (MQ=255) acacCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTgg < 8:42302/149‑1 (MQ=255) cacCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGccgctgctaccctccagtttcaaggc < 7:94118‑M1/115‑27 (MQ=255) cacCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGccgctgctaccctccagtttcaaggc > 8:94118‑M1/1‑89 (MQ=255) ggTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGgcggcg > 2:112573/1‑148 (MQ=255) tGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGt < 8:231558/148‑1 (MQ=255) cgtggcgtggACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGGCCCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCa < 1:241417/149‑1 (MQ=255) cgtggcgtggACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCa < 2:278128/148‑1 (MQ=255) gtggcgtggACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGc > 6:127219/1‑149 (MQ=255) gcgtggACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTg > 4:165031/1‑149 (MQ=255) gcgGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCTTGCCCGGCGt < 5:127219/149‑1 (MQ=255) ggTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCt < 1:112573/149‑1 (MQ=255) tCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTAt < 6:268110/149‑1 (MQ=255) tCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTAt < 3:165031/149‑1 (MQ=255) tCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCa < 2:18515/149‑1 (MQ=255) aTGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAggg < 3:138467/149‑1 (MQ=255) gggTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGttcattca > 5:226858/1‑149 (MQ=255) gTTTGAAGCCAAAGACAGCACCACGGAAACCGTGATGACAGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACg > 8:50100/1‑149 (MQ=255) ttGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGttcatt > 1:59701/1‑143 (MQ=255) ttGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGttcatt < 2:59701/143‑1 (MQ=255) gAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCtt > 5:252752/1‑149 (MQ=255) gAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCt < 7:177554/148‑1 (MQ=255) aGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAg < 5:76211/131‑1 (MQ=255) aGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAg > 6:76211/1‑131 (MQ=255) cAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGt > 7:3848/1‑149 (MQ=255) aaGGCAGCACCAAGGAAACCTTGATGACGGCCTTGAAACTGGAGGTTAGCAGCTGCAAGG‑CCCTGCGCCAGATCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTTCCCGGCGTCTATTCAGGGTTCATTCAGGGCTTCATGTTc < 2:195105/149‑1 (MQ=255) agtctgcaCCACGGATACCGTTATTACGGCCTTGAAACTGGATGGTAGCAGCGGCATGG‑CCCTGGGCCATAGTATGGCGGCTGTGTGATGTGGTGGCGTAGTCAGCTTGCCCGGCGTTTATGCACGATTCATTCACGGCTTCATGTTCg < 7:50100/144‑1 (MQ=255) ggCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCgg < 8:3848/149‑1 (MQ=255) cagcaCCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTg < 3:13831/149‑1 (MQ=255) accacGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGc > 2:50182/1‑149 (MQ=255) ggAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTc > 6:13045/1‑148 (MQ=255) tgatgaCGGCCTTGAAACTGGAGGGTAGCAGCGGcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtgtctggcgaatgatgctgtcggcagg < 4:178832‑M2/148‑115 (MQ=255) tgatgaCGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGc > 5:114574/1‑149 (MQ=255) aCGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGa < 6:226858/148‑1 (MQ=255) aCGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGAc > 6:287820/1‑149 (MQ=255) cGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGAcc > 6:180042/1‑149 (MQ=255) ggCCTTGccgctgctaccctccagtttcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtgtctggcgaatgatgctgtcggcaggatcatcat > 2:226775‑M1/1‑7 (MQ=255) gCCTTGccgctgctaccctccagtttcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtgtctggcgaatgatgctgtcggcaggatcatcatc < 4:138467‑M1/149‑144 (MQ=255) gCCTTGAAACTGGAGGGTAGCAGCGGcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtg > 8:94118‑M2/1‑26 (MQ=255) gCCTTGAAACTGGAGGGTAGCAGCGGcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtg < 7:94118‑M2/115‑90 (MQ=255) cTTGccgctgctaccctccagtttcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtgtctggcgaatgatgctgtcggcaggatcatcatcct > 2:15690‑M1/1‑4 (MQ=255) ttGccgctgctaccctccagtttcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtgtctggcgaatgatgctgtcggcaggatcatcatcctt > 1:116486‑M1/1‑3 (MQ=255) | GTCATCCCGATCAACTTCGAAAAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCA > NC_002947/4479346‑4479637 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |