New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4479492	45 (0.840)	3 (0.060)	3/250	NT	6.5%	coding (843/1203 nt)	ybdR	Zn‑dependent oxidoreductase
	?	NC_002947	= 4479512	44 (0.860)					coding (863/1203 nt)	ybdR	Zn‑dependent oxidoreductase

AAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGATGGGTCAGACCCATGTTCAA  >  NC_002947/4479367‑4479660                                                                                                                                                  |                                                                                                                                                      aaGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGcaa                                                                                                                                                    >  1:116486‑M2/1‑146 (MQ=255)  aGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGcaag                                                                                                                                                   >  2:15690‑M2/1‑145 (MQ=255)    gatgatgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGcaaggc                                                                                                                                                 <  4:138467‑M2/149‑7 (MQ=255)     atgatgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGcaaggcc                                                                                                                                                >  2:226775‑M2/1‑142 (MQ=255)       gatgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCt                                                                                                                                             >  5:82421/1‑149 (MQ=255)       gatgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGAGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCt                                                                                                                                             >  4:13831/1‑149 (MQ=255)         tgatCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTgc                                                                                                                                           <  2:97265/149‑1 (MQ=255)              cTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCag                                                                                                                                      <  8:302778/149‑1 (MQ=255)                   gACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCAt                                                                                                                                 >  2:316375/1‑149 (MQ=255)                         atcatTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCAACGAAGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCATTTAATCTGGAGGGAAGCAGCGGCAAGC‑CCCTGCGCCAGAGCATCGCGGc                                                                                                                           >  1:195105/1‑149 (MQ=255)                          tcatTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCaga                                                                                                                                     >  8:248627/1‑138 (MQ=255)                          tcatTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCaga                                                                                                                                     <  7:248627/138‑1 (MQ=255)                            atTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCtgt                                                                                                                        <  1:316375/149‑1 (MQ=255)                                     acacCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTgg                                                                                                               <  8:42302/149‑1 (MQ=255)                                           ggTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGgcggcg                                                                                                          >  2:112573/1‑148 (MQ=255)                                               tGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGt                                                                                                      <  8:231558/148‑1 (MQ=255)                                                 cgtggcgtggACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGGCCCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCa                                                                                                    <  1:241417/149‑1 (MQ=255)                                                 cgtggcgtggACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCa                                                                                                    <  2:278128/148‑1 (MQ=255)                                                  gtggcgtggACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGc                                                                                                  >  6:127219/1‑149 (MQ=255)                                                     gcgtggACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTg                                                                                               >  4:165031/1‑149 (MQ=255)                                                             gcgGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCTTGCCCGGCGt                                                                                       <  5:127219/149‑1 (MQ=255)                                                               ggTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCt                                                                                     <  1:112573/149‑1 (MQ=255)                                                                 tCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTAt                                                                                   <  3:165031/149‑1 (MQ=255)                                                                 tCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTAt                                                                                   <  6:268110/149‑1 (MQ=255)                                                                    tCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCa                                                                                <  2:18515/149‑1 (MQ=255)                                                                       aTGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAggg                                                                             <  3:138467/149‑1 (MQ=255)                                                                               gggTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGttcattca                                                                     >  5:226858/1‑149 (MQ=255)                                                                                 gTTTGAAGCCAAAGACAGCACCACGGAAACCGTGATGACAGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACg                                                                   >  8:50100/1‑149 (MQ=255)                                                                                   ttGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGttcatt                                                                       >  1:59701/1‑143 (MQ=255)                                                                                   ttGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGttcatt                                                                       <  2:59701/143‑1 (MQ=255)                                                                                     gAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCtt                                                               >  5:252752/1‑149 (MQ=255)                                                                                     gAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCt                                                                <  7:177554/148‑1 (MQ=255)                                                                                       aGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAg                                                                               >  6:76211/1‑131 (MQ=255)                                                                                       aGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAg                                                                               <  5:76211/131‑1 (MQ=255)                                                                                          cAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGt                                                          >  7:3848/1‑149 (MQ=255)                                                                                            aaGGCAGCACCAAGGAAACCTTGATGACGGCCTTGAAACTGGAGGTTAGCAGCTGCAAGG‑CCCTGCGCCAGATCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTTCCCGGCGTCTATTCAGGGTTCATTCAGGGCTTCATGTTc                                                        <  2:195105/149‑1 (MQ=255)                                                                                             agtctgcaCCACGGATACCGTTATTACGGCCTTGAAACTGGATGGTAGCAGCGGCATGG‑CCCTGGGCCATAGTATGGCGGCTGTGTGATGTGGTGGCGTAGTCAGCTTGCCCGGCGTTTATGCACGATTCATTCACGGCTTCATGTTCg                                                       <  7:50100/144‑1 (MQ=255)                                                                                              ggCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCgg                                                      <  8:3848/149‑1 (MQ=255)                                                                                                cagcaCCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTg                                                    <  3:13831/149‑1 (MQ=255)                                                                                                    accacGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGc                                                >  2:50182/1‑149 (MQ=255)                                                                                                         ggAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTc                                            >  6:13045/1‑148 (MQ=255)                                                                                                                 tgatgaCGGCCTTGAAACTGGAGGGTAGCAGCGGcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtgtctggcgaatgatgctgtcggcagg                                     <  4:178832‑M2/148‑115 (MQ=255)                                                                                                                 tgatgaCGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGc                                   >  5:114574/1‑149 (MQ=255)                                                                                                                      aCGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGa                               <  6:226858/148‑1 (MQ=255)                                                                                                                      aCGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGAc                              >  6:287820/1‑149 (MQ=255)                                                                                                                       cGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGAcc                             >  6:180042/1‑149 (MQ=255)                                                                                                                         gCCTTGAAACTGGAGGGTAGCAGCGGcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtg                                                              <  7:94118‑M2/115‑90 (MQ=255)                                                                                                                         gCCTTGAAACTGGAGGGTAGCAGCGGcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtg                                                              >  8:94118‑M2/1‑26 (MQ=255)                                                                                                                               aaaCTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGAt                     >  7:193899/1‑149 (MQ=255)                                                                                                                               aaaCTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGAt                     >  4:142110/1‑149 (MQ=255)                                                                                                                                aaCTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGATg                    <  1:50182/149‑1 (MQ=255)                                                                                                                                 aCTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGATgg                   <  6:252752/149‑1 (MQ=255)                                                                                                                                            gcagcGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGATGGGTCAGa             >  4:15302/1‑144 (MQ=255)                                                                                                                                            gcagcGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGATGGGTCAGa             <  3:15302/144‑1 (MQ=255)                                                                                                                                                 ggcaaggccgtcatcacggtttccgtggtgctgcctttggcttcaaacccgaccgcatcgatgaccgcgtccacgccacgcatacccggtgtctggcgaatgatgctgtcggcaggatcatcatccttttcgaagttgatcgggatgac    >  3:178832‑M2/1‑2 (MQ=255)                                                                                                                                                  gCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGATGGGTCAGACCCATGTTCaa  <  5:180042/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      AAGGATGATGATCCTGCCGACAGCATCATTCGCCAGACACCGGGTATGCGTGGCGTGGACGCGGTCATCGATGCGGTCGGGTTTGAAGCCAAAGGCAGCACCACGGAAACCGTGATGACGGCCTTGAAACTGGAGGGTAGCAGCGGCAAGG‑CCCTGCGCCAGAGCATCGCGGCTGTGCGACGTGGCGGCGTAGTCAGCGTGCCCGGCGTCTATGCAGGGTTCATTCACGGCTTCATGTTCGGTGATGCCTTCGACAAAGGCCTGACCTTCAAGATGGGTCAGACCCATGTTCAA  >  NC_002947/4479367‑4479660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.