New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5456444	36 (0.670)	3 (0.060)	3/250	NT	7.9%	coding (176/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	= 5456493	36 (0.710)					coding (225/2607 nt)	leuS	leucine‑‑tRNA ligase

TCGAAGCCGCCGCCCAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATG  >  NC_002947/5456297‑5456592                                                                                                                                                    |                                                                                                                                                      tCGAAGCCGCCGCCCAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGG                                                                                                                                                       <  3:270947‑M1/148‑1 (MQ=255)   gAAGCCGCCGCCCAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTg                                                                                                                                                     <  6:233494/148‑1 (MQ=255)    aaGCCGCCGCCCAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGAc                                                                                                                                                   >  7:98823/1‑149 (MQ=255)    aaGCCGCCGCCCAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTAATGCCTATCGATGATCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGAc                                                                                                                                                   >  1:129179/1‑149 (MQ=255)         gccgccCAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGAt                                                                                                                                              <  8:98823/149‑1 (MQ=255)            gccCAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGc                                                                                                                                           <  2:88095/149‑1 (MQ=255)              ccAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGccc                                                                                                                                         <  4:42675/149‑1 (MQ=255)                aGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGc                                                                                                                                       >  3:112141/1‑149 (MQ=255)                     ttCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTAc                                                                                                                                    >  5:328813/1‑147 (MQ=255)                          ggACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCa                                                                                                                             >  1:59611/1‑149 (MQ=255)                           gACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCAt                                                                                                                            >  7:114904/1‑149 (MQ=255)                              gAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCt                                                                                                                         <  4:112141/149‑1 (MQ=255)                                gCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGctgcaggacgttcttgcccagcatgcgctgg                                                                                                                        >  8:151972‑M1/1‑117 (MQ=255)                                 caacaaTCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTggg                                                                                                                      >  6:93831/1‑149 (MQ=255)                                         gTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACg                                                                                                              <  2:59611/149‑1 (MQ=255)                                            cGCTGTTACCGAACAGCCAGTCAAAGACACCTACTATTGCCTATCGATGTTCCCGTAGCCGAGCGGCAAGCTACACATGGGCAACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTc                                                                                                            <  8:167366/148‑1 (MQ=255)                                             gCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGctgcaggacgttcttgcccagcatgcgctggtagcgggcaatcac                                                                                                          <  4:306649‑M1/149‑46 (MQ=255)                                             gCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCt                                                                                                          >  3:43505/1‑149 (MQ=255)                                              cTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTg                                                                                                         <  5:93831/149‑1 (MQ=255)                                                     cGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGccga                                                                                                  <  6:274689‑M2/149‑5 (MQ=255)                                                            ccAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTg                                                                                           >  2:194038/1‑149 (MQ=255)                                                             cAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGctgcaggacgttcttgcccagcatgcgctggtagcgggcaatcacgtcaccgatggtgtag                                                                                          <  7:151972‑M1/149‑62 (MQ=255)                                                                 cAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACg                                                                                      <  3:253725/149‑1 (MQ=255)                                                                             ctaTTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCAt                                                                           <  4:43505/147‑1 (MQ=255)                                                                              taTTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCg                                                                               >  3:289266/1‑142 (MQ=255)                                                                              taTTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCg                                                                               <  4:289266/142‑1 (MQ=255)                                                                                         gATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAAcg                                                             >  3:95438/1‑149 (MQ=255)                                                                                               cccGTACCCGAGCGGCAAGCTACACATGGGCCACTTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACgcggcg                                                        <  5:183436/148‑1 (MQ=255)                                                                                                ccGTACCCGAGCGGCAAGCTACAGATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCATCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGa                                                       <  2:129179/148‑1 (MQ=255)                                                                                                      ccGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACgcgg                                                          >  8:104415/1‑139 (MQ=255)                                                                                                      ccGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACgcgg                                                          <  7:104415/139‑1 (MQ=255)                                                                                                       cGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGaaaaa                                                >  7:281053/1‑148 (MQ=255)                                                                                                        gAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAaac                                               >  7:42624/1‑148 (MQ=255)                                                                                                         aGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAaacaa                                             <  4:95438/149‑1 (MQ=255)                                                                                                                     cacaTGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGc                                 >  4:207080/1‑149 (MQ=255)                                                                                                                        aTGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCaa                              <  5:106214/149‑1 (MQ=255)                                                                                                                          gggCCACGTGCGCAACTACACCATCGGTGACGTGTTTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCCGCAGCCGATTGGCTTGGACGCTCTTCGGCATGCCCGCGGAAAACGCGGCGATGaaaa                                                 <  1:46684/129‑1 (MQ=255)                                                                                                                          gggCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGt                            >  6:269508/1‑149 (MQ=255)                                                                                                                          gggCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGt                            >  7:289389/1‑149 (MQ=255)                                                                                                                          gggCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCCGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGaaaa                                                 >  2:46684/1‑128 (MQ=255)                                                                                                                           ggCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGTTGAAAAACAACGTCGCCCCGGCCAAGTg                           <  1:194038/149‑1 (MQ=255)                                                                                                                              cACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGAc                        <  6:328813/149‑1 (MQ=255)                                                                                                                                        aCTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAAc              <  3:207080/149‑1 (MQ=255)                                                                                                                                         cTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGccgatggtgtagttgcgcacgtggcccatgtgtagcttgccgctcgggtacgggaacatcgataggcaatagtaggtgtctttgcctg              <  7:151972‑M2/149‑89 (MQ=255)                                                                                                                                               cATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAACAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGAc        >  4:134551/1‑148 (MQ=255)                                                                                                                                                 tCGGctgcaggacgttcttgcccagcatgcgctggtagcgggcaatcacgtcaccgatggtgtagttgcgcacgtggcccatgtgtagcttgccgctcgggtacgggaacatcgataggcaatagtaggtgtctttgcctggctgttcg      <  6:274689‑M1/149‑146 (MQ=255)                                                                                                                                                    gTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATg  <  5:269508/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TCGAAGCCGCCGCCCAGAAGTTCTGGGACGAGCAACAATCGTTCGCTGTTACCGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATG  >  NC_002947/5456297‑5456592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.