New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5456444	36 (0.670)	3 (0.060)	3/250	NT	7.9%	coding (176/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	= 5456493	36 (0.710)					coding (225/2607 nt)	leuS	leucine‑‑tRNA ligase

CGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAG  >  NC_002947/5456349‑5456641                                                                                                                                                 |                                                                                                                                                      cGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGccga                                                                                                                                                   <  6:274689‑M2/149‑5 (MQ=255)        ccAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTg                                                                                                                                            >  2:194038/1‑149 (MQ=255)             cAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACg                                                                                                                                       <  3:253725/149‑1 (MQ=255)                         ctaTTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCAt                                                                                                                            <  4:43505/147‑1 (MQ=255)                          taTTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCg                                                                                                                                >  3:289266/1‑142 (MQ=255)                          taTTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCg                                                                                                                                <  4:289266/142‑1 (MQ=255)                                     gATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAAcg                                                                                                              >  3:95438/1‑149 (MQ=255)                                           cccGTACCCGAGCGGCAAGCTACACATGGGCCACTTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACgcggcg                                                                                                         <  5:183436/148‑1 (MQ=255)                                            ccGTACCCGAGCGGCAAGCTACAGATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCATCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGa                                                                                                        <  2:129179/148‑1 (MQ=255)                                                  ccGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACgcgg                                                                                                           <  7:104415/139‑1 (MQ=255)                                                  ccGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACgcgg                                                                                                           >  8:104415/1‑139 (MQ=255)                                                   cGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGaaaaa                                                                                                 >  7:281053/1‑148 (MQ=255)                                                    gAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAaac                                                                                                >  7:42624/1‑148 (MQ=255)                                                     aGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAaacaa                                                                                              <  4:95438/149‑1 (MQ=255)                                                                 cacaTGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGc                                                                                  >  4:207080/1‑149 (MQ=255)                                                                    aTGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCaa                                                                               <  5:106214/149‑1 (MQ=255)                                                                      gggCCACGTGCGCAACTACACCATCGGTGACGTGTTTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCCGCAGCCGATTGGCTTGGACGCTCTTCGGCATGCCCGCGGAAAACGCGGCGATGaaaa                                                                                                  <  1:46684/129‑1 (MQ=255)                                                                      gggCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGt                                                                             >  7:289389/1‑149 (MQ=255)                                                                      gggCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGt                                                                             >  6:269508/1‑149 (MQ=255)                                                                      gggCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCCGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGaaaa                                                                                                  >  2:46684/1‑128 (MQ=255)                                                                       ggCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGTTGAAAAACAACGTCGCCCCGGCCAAGTg                                                                            <  1:194038/149‑1 (MQ=255)                                                                          cACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGAc                                                                         <  6:328813/149‑1 (MQ=255)                                                                                    aCTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAAc                                                               <  3:207080/149‑1 (MQ=255)                                                                                     cTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGccgatggtgtagttgcgcacgtggcccatgtgtagcttgccgctcgggtacgggaacatcgataggcaatagtaggtgtctttgcctg                                                               <  7:151972‑M2/149‑89 (MQ=255)                                                                                           cATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAACAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGAc                                                         >  4:134551/1‑148 (MQ=255)                                                                                                gTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATg                                                   <  5:269508/149‑1 (MQ=255)                                                                                                   aCGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGaa                                                 <  5:274689/148‑1 (MQ=255)                                                                                                     gTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGccgatggtgtagttgcgcacgtggcccatgtgtagcttgccgctcgggtacgggaacatcgataggcaatagtaggtgtctttgcctggctgttcggtaacagc                                               <  4:306649‑M2/149‑105 (MQ=255)                                                                                                     gTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGAc                                              >  7:18302/1‑149 (MQ=255)                                                                                                             ccGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTc                                       >  8:186760/1‑148 (MQ=255)                                                                                                                   ccAGCGCATGCTGGGCAAGAACGTCCTGCAGccgatggtgtagttgcgcacgtggcccatgtgtagcttgccgctcgggtacgggaacatcgataggcaatagtaggtgtctttgcctggctgttcggtaacagcgaacgattgttgc                                  >  8:151972‑M2/1‑31 (MQ=255)                                                                                                                   ccAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAgcc                                >  8:119993/1‑149 (MQ=255)                                                                                                                    cAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAgcct                               >  5:55940/1‑149 (MQ=255)                                                                                                                       cgcATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAgcctggg                            >  1:189170/1‑149 (MQ=255)                                                                                                                           tGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAgcctgggcctg                        <  8:289389/149‑1 (MQ=255)                                                                                                                            gCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAgcctgggcctgg                       >  5:22464/1‑149 (MQ=255)                                                                                                                                   aaGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAGCCTGGGCCTGGCCATCGa                >  7:126872/1‑149 (MQ=255)                                                                                                                                     gAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGAccc                                            >  7:198721/1‑119 (MQ=255)                                                                                                                                     gAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGAccc                                            <  8:198721/119‑1 (MQ=255)                                                                                                                                     gAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAGCCTGGGCCTGGCCATCGACt              >  2:247367/1‑149 (MQ=255)                                                                                                                                       aCGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAGCCTGGGCCTGGCCATCGACTg             <  7:186760/148‑1 (MQ=255)                                                                                                                                               cAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTg     >  2:275751/1‑148 (MQ=255)                                                                                                                                                 gCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAg  <  8:281053/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                      CGAACAGCCAGGCAAAGACACCTACTATTGCCTATCGATGTTCCCGTACCCGAGCGGCAAGCTACACATGGGCCACGTGCGCAACTACACCATCGGTGACGTGATTGCCCGCTACCAGCGCATGCTGGGCAAGAACGTCCTGCAGCCGATGGGCTGGGACGCT‑TTCGGCATGCCCGCGGAAAACGCGGCGATGAAAAACAACGTCGCCCCGGCCAAGTGGACGTACGAAAACATCGACTACATGAAGACCCAGCTCAAGAGCCTGGGCCTGGCCATCGACTGGGCACGTGAAG  >  NC_002947/5456349‑5456641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.