New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5808703 =46 (0.850)4 (0.080) 3/250 NT 8.9% coding (586/1269 nt) maeB malic enzyme B
?NC_002947 5808753 = 38 (0.750)coding (536/1269 nt) maeB malic enzyme B

GCTTGTCGGTCGCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGG  >  NC_002947/5808556‑5808845
                                                                                                                                                     |                                                                                                                                              
gcTTGTCGGTCGCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAgcg                                                                                                                                               >  3:127768/1‑149 (MQ=255)
 cTTGTCGGTCGCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAgcgc                                                                                                                                              >  3:103393/1‑149 (MQ=255)
    gtcggtcgCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCgg                                                                                                                                           >  1:65021/1‑149 (MQ=255)
    gcatcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGcc                                                                                                                                             <  7:23173‑M1/4‑1 (MQ=255)
     catcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCg                                                                                                                                            >  6:62236‑M1/145‑149 (MQ=255)
       tcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgtctgccgctggcatgatcaacgccctggaaatCGCCgg                                                                                                                                           <  2:125729‑M1/6‑1 (MQ=255)
       tcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCgg                                                                                                                                           <  3:179481‑M1/6‑1 (MQ=255)
       tcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCgg                                                                                                                                           <  7:260236‑M1/6‑1 (MQ=255)
        gtcgCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAAAG‑‑GCAGCAGCGCCGGCGcc                                                                                                                                       >  3:158856/1‑149 (MQ=255)
                         cgcCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTg                                                                                                                       <  5:29996/148‑1 (MQ=255)
                         cgcCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTg                                                                                                                       <  7:97965/148‑1 (MQ=255)
                            cTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGctt                                                                                                                   <  2:11026/149‑1 (MQ=255)
                                 aCTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGAAGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGccc                                                                                                                                      <  8:61755/125‑1 (MQ=255)
                                 aCTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGAAGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGccc                                                                                                                                      >  7:61755/1‑125 (MQ=255)
                                  cTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCa                                                                                                             <  7:261460/149‑1 (MQ=255)
                                   tGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAg                                                                                                            >  4:143456/1‑149 (MQ=255)
                                     gTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGtt                                                                                                          >  4:185486/1‑149 (MQ=255)
                                     gTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGt                                                                                                           <  4:114688/148‑1 (MQ=255)
                                      ttCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGttt                                                                                                         <  8:106721/149‑1 (MQ=255)
                                         aGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGt                                                                                                           <  6:167857/144‑1 (MQ=255)
                                         aGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGt                                                                                                           >  5:167857/1‑144 (MQ=255)
                                         aGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCtt                                                                                                      <  4:103393/149‑1 (MQ=255)
                                           gtcgtcACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCtt                                                                                                                        >  1:169814/1‑129 (MQ=255)
                                           gtcgtcACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCtt                                                                                                                        <  2:169814/129‑1 (MQ=255)
                                             atcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCgg                                                                                                                                           >  8:137840‑M1/105‑110 (MQ=255)
                                             atcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCgg                                                                                                                                           <  7:137840‑M1/6‑1 (MQ=255)
                                                 aacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGc                                                                                                <  8:17561‑M1/49‑1 (MQ=255)
                                                 aCGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa                                                                                              >  3:309916/1‑149 (MQ=255)
                                                   ggCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCAAGTTTCTTGCCGGCGAtt                                                                                            >  8:142430/1‑149 (MQ=255)
                                                   cgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa                                                                                              >  7:17561‑M1/99‑149 (MQ=255)
                                                   cgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa                                                                                              >  6:47021‑M1/99‑149 (MQ=255)
                                                       ccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTc                                                                                          >  2:119146‑M1/95‑149 (MQ=255)
                                                       aGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTc                                                                                          >  4:151472/1‑147 (MQ=255)
                                                         cGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATGCCCCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCa                                                                                        <  1:102098/149‑1 (MQ=255)
                                                             gATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCg                                                                                   <  1:314119/148‑1 (MQ=255)
                                                             gATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGt                                                                                  >  7:300318/1‑149 (MQ=255)
                                                                cACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGa                                                                               >  4:282002/1‑149 (MQ=255)
                                                                  cGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCCTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATc                                                                             <  2:65021/149‑1 (MQ=255)
                                                                   gCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCa                                                                            >  3:165790/1‑149 (MQ=255)
                                                                    ccACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCAt                                                                           <  7:286316/149‑1 (MQ=255)
                                                                    ccACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCAt                                                                           <  2:4178/149‑1 (MQ=255)
                                                                     cACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATg                                                                          <  5:217159/149‑1 (MQ=255)
                                                                                        gATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATgg                                                       <  3:282002/149‑1 (MQ=255)
                                                                                          tGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCa                                                     <  3:143456/149‑1 (MQ=255)
                                                                                                 gACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTAcc                                                <  3:185486/147‑1 (MQ=255)
                                                                                                     ttCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTg                                          >  8:260236/1‑149 (MQ=255)
                                                                                                            ccATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCg                                   >  5:222923/1‑149 (MQ=255)
                                                                                                               tGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTgg                                <  3:100648/149‑1 (MQ=255)
                                                                                                                gCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGGCTTCGTgg                                >  3:195820/1‑148 (MQ=255)
                                                                                                                        gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCggg                       <  4:127768/149‑1 (MQ=255)
                                                                                                                        gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCgg                        >  4:179481/1‑148 (MQ=255)
                                                                                                                        gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCgg                        >  3:212434/1‑148 (MQ=255)
                                                                                                                            cTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGt                   >  8:23173/1‑149 (MQ=255)
                                                                                                                                    aGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGAACATGCAAGCGGAAGTCACGATGGAAGAACCGTGCTGGACAACGTGGACCACAGGCATGACGCAATGt           >  4:252219/1‑149 (MQ=255)
                                                                                                                                           g‑‑gCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGt                                  >  6:134341/1‑119 (MQ=255)
                                                                                                                                           g‑‑gCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGt                                  <  5:134341/119‑1 (MQ=255)
                                                                                                                                              gcagcaGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAg   <  6:222923/149‑1 (MQ=255)
                                                                                                                                               cagcagCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAgg  <  2:186868/149‑1 (MQ=255)
                                                                                                                                               cagcagCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAgg  <  4:165790/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                              
GCTTGTCGGTCGCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGG  >  NC_002947/5808556‑5808845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.