New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5808703 = | 46 (0.850) | 4 (0.080) | 3/250 | NT | 8.9% | coding (586/1269 nt) | maeB | malic enzyme B |
? | NC_002947 | 5808753 = | 38 (0.750) | coding (536/1269 nt) | maeB | malic enzyme B |
GCTTGTCGGTCGCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGG > NC_002947/5808556‑5808845 | gcTTGTCGGTCGCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAgcg > 3:127768/1‑149 (MQ=255) cTTGTCGGTCGCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAgcgc > 3:103393/1‑149 (MQ=255) gtcggtcgCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCgg > 1:65021/1‑149 (MQ=255) gcatcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGcc < 7:23173‑M1/4‑1 (MQ=255) catcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCg > 6:62236‑M1/145‑149 (MQ=255) tcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgtctgccgctggcatgatcaacgccctggaaatCGCCgg < 2:125729‑M1/6‑1 (MQ=255) tcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCgg < 3:179481‑M1/6‑1 (MQ=255) tcaaccttgaagacatcaaggcacctgagtgctttgaaatcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCgg < 7:260236‑M1/6‑1 (MQ=255) gtcgCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAAAG‑‑GCAGCAGCGCCGGCGcc > 3:158856/1‑149 (MQ=255) cgcCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTg < 5:29996/148‑1 (MQ=255) cgcCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTg < 7:97965/148‑1 (MQ=255) cTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGctt < 2:11026/149‑1 (MQ=255) aCTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGAAGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGccc < 8:61755/125‑1 (MQ=255) aCTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGAAGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGccc > 7:61755/1‑125 (MQ=255) cTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCa < 7:261460/149‑1 (MQ=255) tGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAg > 4:143456/1‑149 (MQ=255) gTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGtt > 4:185486/1‑149 (MQ=255) gTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGt < 4:114688/148‑1 (MQ=255) ttCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGttt < 8:106721/149‑1 (MQ=255) aGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGt < 6:167857/144‑1 (MQ=255) aGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGt > 5:167857/1‑144 (MQ=255) aGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCtt < 4:103393/149‑1 (MQ=255) gtcgtcACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCtt > 1:169814/1‑129 (MQ=255) gtcgtcACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCtt < 2:169814/129‑1 (MQ=255) atcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCgg > 8:137840‑M1/105‑110 (MQ=255) atcgaacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCgg < 7:137840‑M1/6‑1 (MQ=255) aacgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGc < 8:17561‑M1/49‑1 (MQ=255) aCGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa > 3:309916/1‑149 (MQ=255) ggCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCAAGTTTCTTGCCGGCGAtt > 8:142430/1‑149 (MQ=255) cgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa > 7:17561‑M1/99‑149 (MQ=255) cgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa > 6:47021‑M1/99‑149 (MQ=255) ccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTc > 2:119146‑M1/95‑149 (MQ=255) aGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTc > 4:151472/1‑147 (MQ=255) cGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATGCCCCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCa < 1:102098/149‑1 (MQ=255) gATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCg < 1:314119/148‑1 (MQ=255) gATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGt > 7:300318/1‑149 (MQ=255) cACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGa > 4:282002/1‑149 (MQ=255) cGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCCTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATc < 2:65021/149‑1 (MQ=255) gCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCa > 3:165790/1‑149 (MQ=255) ccACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCAt < 7:286316/149‑1 (MQ=255) ccACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCAt < 2:4178/149‑1 (MQ=255) cACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATg < 5:217159/149‑1 (MQ=255) gATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATgg < 3:282002/149‑1 (MQ=255) tGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCa < 3:143456/149‑1 (MQ=255) gACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTAcc < 3:185486/147‑1 (MQ=255) ttCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTg > 8:260236/1‑149 (MQ=255) ccATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCg > 5:222923/1‑149 (MQ=255) tGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTgg < 3:100648/149‑1 (MQ=255) gCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGGCTTCGTgg > 3:195820/1‑148 (MQ=255) gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCggg < 4:127768/149‑1 (MQ=255) gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCgg > 4:179481/1‑148 (MQ=255) gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCgg > 3:212434/1‑148 (MQ=255) cTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGt > 8:23173/1‑149 (MQ=255) aGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGAACATGCAAGCGGAAGTCACGATGGAAGAACCGTGCTGGACAACGTGGACCACAGGCATGACGCAATGt > 4:252219/1‑149 (MQ=255) g‑‑gCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGt > 6:134341/1‑119 (MQ=255) g‑‑gCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGt < 5:134341/119‑1 (MQ=255) gcagcaGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAg < 6:222923/149‑1 (MQ=255) cagcagCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAgg < 2:186868/149‑1 (MQ=255) cagcagCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAgg < 4:165790/149‑1 (MQ=255) | GCTTGTCGGTCGCGTGGGCGAACTGCGCCTTGTACTGGTTCAGGTCGTCACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGG > NC_002947/5808556‑5808845 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |