New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5808703 =	46 (0.850)	4 (0.080)	3/250	NT	8.9%	coding (586/1269 nt)	maeB	malic enzyme B
	?	NC_002947	5808753 =	38 (0.750)					coding (536/1269 nt)	maeB	malic enzyme B

ACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCTTCAAGGTTGATGC  >  NC_002947/5808605‑5808897                                                                                                                                                       |                                                                                                                                                 aCGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa                                                                                                                                                  >  3:309916/1‑149 (MQ=255)   ggCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCAAGTTTCTTGCCGGCGAtt                                                                                                                                                >  8:142430/1‑149 (MQ=255)   cgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa                                                                                                                                                  >  7:17561‑M1/99‑149 (MQ=255)   cgtaccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGa                                                                                                                                                  >  6:47021‑M1/99‑149 (MQ=255)       ccctgatcgaacagtgcgacatcccggtgttccacgatgaccagcacggtactgccatcgtgactgccgctggcatgatcaacgccctggaaatCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTc                                                                                                                                              >  2:119146‑M1/95‑149 (MQ=255)       aGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTc                                                                                                                                              >  4:151472/1‑147 (MQ=255)         cGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATGCCCCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCa                                                                                                                                            <  1:102098/149‑1 (MQ=255)             gATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCg                                                                                                                                       <  1:314119/148‑1 (MQ=255)             gATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGt                                                                                                                                      >  7:300318/1‑149 (MQ=255)                cACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGa                                                                                                                                   >  4:282002/1‑149 (MQ=255)                  cGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCCTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATc                                                                                                                                 <  2:65021/149‑1 (MQ=255)                   gCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCa                                                                                                                                >  3:165790/1‑149 (MQ=255)                    ccACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCAt                                                                                                                               <  2:4178/149‑1 (MQ=255)                    ccACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCAt                                                                                                                               <  7:286316/149‑1 (MQ=255)                     cACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATg                                                                                                                              <  5:217159/149‑1 (MQ=255)                                        gATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATgg                                                                                                           <  3:282002/149‑1 (MQ=255)                                          tGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCa                                                                                                         <  3:143456/149‑1 (MQ=255)                                                 gACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTAcc                                                                                                    <  3:185486/147‑1 (MQ=255)                                                     ttCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTg                                                                                              >  8:260236/1‑149 (MQ=255)                                                            ccATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCg                                                                                       >  5:222923/1‑149 (MQ=255)                                                               tGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTgg                                                                                    <  3:100648/149‑1 (MQ=255)                                                                gCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGGCTTCGTgg                                                                                    >  3:195820/1‑148 (MQ=255)                                                                        gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCggg                                                                           <  4:127768/149‑1 (MQ=255)                                                                        gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCgg                                                                            >  4:179481/1‑148 (MQ=255)                                                                        gcagcTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCgg                                                                            >  3:212434/1‑148 (MQ=255)                                                                            cTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGt                                                                       >  8:23173/1‑149 (MQ=255)                                                                                    aGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGAACATGCAAGCGGAAGTCACGATGGAAGAACCGTGCTGGACAACGTGGACCACAGGCATGACGCAATGt                                                               >  4:252219/1‑149 (MQ=255)                                                                                           g‑‑gCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGt                                                                                      <  5:134341/119‑1 (MQ=255)                                                                                           g‑‑gCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGt                                                                                      >  6:134341/1‑119 (MQ=255)                                                                                              gcagcaGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAg                                                       <  6:222923/149‑1 (MQ=255)                                                                                               cagcagCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAgg                                                      <  4:165790/149‑1 (MQ=255)                                                                                               cagcagCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAgg                                                      <  2:186868/149‑1 (MQ=255)                                                                                                gaaatcgccggcaagaaactggaagaagccaagatcgtctgcctgggcgccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAggg                                                     >  2:119146‑M2/56‑149 (MQ=255)                                                                                                    tcgccggcaagaaactggaagaagccaagatcgtctgcctgggcgccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACg                                                 >  7:17561‑M2/52‑149 (MQ=255)                                                                                                    tcgccggcaagaaactggaagaagccaagatcgtctgcctgggcgccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACg                                                 >  6:47021‑M2/52‑149 (MQ=255)                                                                                                      gccggcaagaaactggaagaagccaagatcgtctgcctgggcgccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGtt                                               <  8:17561‑M2/100‑1 (MQ=255)                                                                                                             cccAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGAttt                                         >  5:54879/1‑148 (MQ=255)                                                                                                              ccAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTc                                        >  7:80389/1‑148 (MQ=255)                                                                                                              ccAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTc                                        >  8:31998/1‑148 (MQ=255)                                                                                                                 ggCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAg                                    <  4:309916/149‑1 (MQ=255)                                                                                                                    aGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCAc                                 <  7:31998/149‑1 (MQ=255)                                                                                                                         aTCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGACACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAgg                            >  1:125729/1‑149 (MQ=255)                                                                                                                              ggCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCt                       >  2:139062/1‑149 (MQ=255)                                                                                                                               gCTTCTTCCAGTTTCTTGGCGGCGATTTCCATGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCt                       <  3:252219/148‑1 (MQ=255)                                                                                                                               gCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCtt                      <  3:151472/149‑1 (MQ=255)                                                                                                                                    ttcCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGAttt                                         >  7:208152/1‑125 (MQ=255)                                                                                                                                    ttcCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGAttt                                         <  8:208152/125‑1 (MQ=255)                                                                                                                                       cAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCt               >  5:125913/1‑148 (MQ=255)                                                                                                                                              ttGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCTTCAAGGtt       >  7:161727/1‑149 (MQ=255)                                                                                                                                                 ccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGAt                                           <  7:137840‑M2/104‑1 (MQ=255)                                                                                                                                                 ccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGAt                                           >  8:137840‑M2/7‑110 (MQ=255)                                                                                                                                                 ccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCTTCAAGGTTGa     <  7:260236‑M2/142‑1 (MQ=255)                                                                                                                                                 ccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCTTCAAGGTTGa     <  3:179481‑M2/142‑1 (MQ=255)                                                                                                                                                 ccggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGACACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCTTCAAGGTTGa     <  2:125729‑M2/142‑1 (MQ=255)                                                                                                                                                  cggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCTTCAAGGTTGATg   >  6:62236‑M2/6‑149 (MQ=255)                                                                                                                                                   ggcgATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCTTCAAGGTTGATGc  <  7:23173‑M2/145‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                 ACGGCCAGCGTGGATCACGCCACTACGGTCGATCATGAAGATGTTCTCGACCTTCGCACCCATGCTTACCAGCAGCTTCATGCAGGAAATG‑‑GCAGCAGCGCCGGCGCCCAGGCAGACGATCTTGGCTTCTTCCAGTTTCTTGCCGGCGATTTCCAGGGCGTTGATCATGCCAGCGGCAGTCACGATGGCAGTACCGTGCTGGTCATCGTGGAACACCGGGATGTCGCACTGTTCGATCAGGGTACGTTCGATTTCAAAGCACTCAGGTGCCTTGATGTCTTCAAGGTTGATGC  >  NC_002947/5808605‑5808897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.