New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1456018	27 (0.500)	3 (0.060)	3/236	NT	8.1%	intergenic (+97/+152)	PP_1273/PP_1274	multidrug MFS transporter outer membrane protein/short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 1456062	44 (0.910)					intergenic (+141/+108)	PP_1273/PP_1274	multidrug MFS transporter outer membrane protein/short‑chain dehydrogenase/reductase family oxidoreductase

CGGTTAGAGAGGACGCGCAGTATCTGGAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTGCGCAG  >  NC_002947/1455915‑1456205                                                                                                                                                     |                                                                                                                                                  cGGTTAGAGAGGACGCGCAGTATCTGGAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGt                                                                                                                                                  >  1:259887‑M2/1‑148 (MQ=255)  ggTTAGAGAGGACGCGCAGTATCTGGAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTAGTGGCCTCTTCGC‑GGGTGTACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGtg                                                                                                                                                 <  1:107041‑M2/149‑3 (MQ=255)  ggTTAGAGAGGACGCGCAGTATCTGGAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGtg                                                                                                                                                 >  3:235343‑M2/1‑147 (MQ=255)       gagagGACGCGCAGTATCTGGAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCAGCTCCTACAGCGTCCTGGGTCCAACCACCGATGTGGGTCCACCACCAATCTGGtgtag                                                                                                                                              <  8:248832‑M2/147‑6 (MQ=255)            gACGCGCAGTATCTGGAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGtgtag                                                                                                                                              >  5:236235‑M2/1‑137 (MQ=255)            gACGCGCAGTATCTGGAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGtgtag                                                                                                                                              <  6:236235‑M2/142‑6 (MQ=255)                    gTATCTGGAGGGCGGGGTACTGCGGTCCATGGAATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCAGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGAGGGGTTACCcg                                                                                                                              >  2:141077/1‑149 (MQ=255)                    gTATCTGGAGGGCGGGGTACTGCGGACCATGGAATGATGCTTTACAGCCTGTACAGGCCTCTTAGC‑GCGTGAACCAGCACCTACAGCCGACTGTGTCCAAACCCAGATGTGTGTCCACCACCAATCTCCTCTAG‑GAGCGGGTTTAccag                                                                                                                              >  2:146063/1‑147 (MQ=255)                           gAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATAc                                                                                                                      >  4:90652/1‑149 (MQ=255)                                    gTACGGGGGTCCATGGCTTTTTGCTTTACCGCCTGTACTGGCCTCTTGGC‑GGGTTAACCCGCTCCTACCGCGGCCTGTTTCCAACCACCGTTGTGTGTCCACCACCAATCTGGTTTTG‑GAGGGGTTTTACCCGGGCAATACGGTAgcgg                                                                                                              <  4:154470/149‑1 (MQ=255)                                       cTGCGGTCCATGGAATGATGTTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTTAACCCGCTCCTACTGCGGCGTGTGTCCAACCACCGTTGTGTGTCCACCACCAATCTGGTGTTG‑GCGCGGTTTTACCCGCG‑AATACGGTAGCggcggc                                                                                                          <  4:303400/149‑1 (MQ=25)                                           ggTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACg                                                                                                      >  1:159100/1‑149 (MQ=255)                                            gTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACgg                                                                                                     >  8:309794/1‑149 (MQ=255)                                             tCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGt                                                                                                    >  5:186578/1‑149 (MQ=255)                                               cATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTg                                                                                                   >  4:203004/1‑148 (MQ=255)                                                       gatgCTTTACAGCCTGTACTGGACTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑TAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCggg                                                                                          >  5:34278/1‑149 (MQ=255)                                                          gCTTTACAGCCTGTACTGGCCTCTTCGCAGGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGt                                                                                         >  1:19745/1‑148 (MQ=255)                                                            tttACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCACCGGTGAACGGCGGGTGaa                                                                                      >  4:241748/1‑148 (MQ=255)                                                            tttACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGaa                                                                                      >  4:246088/1‑148 (MQ=255)                                                                  gCCTGTACTGGCCTCTTCGC‑GGGTCAACCCGCTCCTACAGCGGCCTGTTTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTc                                                                               <  7:248832/149‑1 (MQ=255)                                                                           ggCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAggcc                                                                      >  2:25810/1‑149 (MQ=255)                                                                                         gTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCAGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTcgcg                                                         >  6:163680/1‑149 (MQ=255)                                                                                              cccGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGtgtaggagcgggttcacccgcgaagaggccagtacaggctgtaaagcatcatgccatggaccgcagtaccccgccctccagatactgcgcgtc                                                      <  3:192269‑M2/149‑94 (MQ=255)                                                                                              cccGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAGAAAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTa                                                     >  1:267063/1‑149 (MQ=255)                                                                                               ccGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTa                                                     >  4:239527/1‑147 (MQ=255)                                                                                               ccGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTa                                                     >  1:292105/1‑147 (MQ=255)                                                                                                cGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGtgtaggagcgggttcacccgcgaagaggccagtacaggctgtaaagcatcatgccatggaccgcagtaccccgccctccagatactgcgcgtcc                                                     <  4:308160‑M2/148‑95 (MQ=255)                                                                                                 gCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTAcagg                                                 >  8:95306/1‑149 (MQ=255)                                                                                                  cTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGtgtaggagcgggttcacccgcgaagaggccagtacaggctgtaaagcatcatgccatggaccgcagtaccccgccctccagatactgcgcgtcctct                                                  >  3:308160‑M2/1‑52 (MQ=255)                                                                                                           cGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCa                                       <  2:107041/149‑1 (MQ=255)                                                                                                            ggCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCAc                                      <  3:90652/149‑1 (MQ=255)                                                                                                            ggCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCAc                                      <  1:25810/149‑1 (MQ=255)                                                                                                             gCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACt                                     >  6:257453/1‑149 (MQ=255)                                                                                                                   gtCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCaga                                 >  1:121856/1‑147 (MQ=255)                                                                                                                    tCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGc                               <  2:292105/148‑1 (MQ=255)                                                                                                                      cAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCggg                            >  7:129358/1‑149 (MQ=255)                                                                                                                       aaCCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGgc                           <  2:19745/149‑1 (MQ=255)                                                                                                                               aTGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCggg                            >  5:219132/1‑140 (MQ=255)                                                                                                                               aTGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCggg                            <  6:219132/140‑1 (MQ=255)                                                                                                                                 gtgtgtCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCg                                           <  5:94304/123‑1 (MQ=255)                                                                                                                                 gtgtgtCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCg                                           >  6:94304/1‑123 (MQ=255)                                                                                                                                   gtgtCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCgcagc                      >  3:286433/1‑142 (MQ=255)                                                                                                                                   gtgtCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCgcagc                      <  4:286433/142‑1 (MQ=255)                                                                                                                                    tgtCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCaaa              <  7:309794/149‑1 (MQ=255)                                                                                                                                        caccaccaATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAgcgc          >  6:206445/1‑149 (MQ=255)                                                                                                                                         accaccaATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCa                                       >  6:62325/1‑119 (MQ=255)                                                                                                                                         accaccaATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCa                                       <  5:62325/119‑1 (MQ=255)                                                                                                                                          ccaccaATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCtt        <  2:267063/149‑1 (MQ=255)                                                                                                                                           caccaATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTg       >  6:158741/1‑149 (MQ=255)                                                                                                                                              caATCTGGTGTTG‑GTGGGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGAGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTgcgc    <  4:80163/149‑1 (MQ=255)                                                                                                                                              caATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTgcgc    <  3:246088/149‑1 (MQ=255)                                                                                                                                              caATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTgcgc    <  3:241748/149‑1 (MQ=255)                                                                                                                                               aaTCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTgcg     >  6:191710/1‑147 (MQ=255)                                                                                                                                                aTCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTGCgcag  >  5:18896/1‑149 (MQ=255)                                                                                                                                                 tCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTGCgcag  >  6:87639/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CGGTTAGAGAGGACGCGCAGTATCTGGAGGGCGGGGTACTGCGGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGC‑GGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG‑GAGCGGGTTTACCCGCG‑AATACGGTAGCGGCGGCAACGGTGAACGGCGGGTGAAAATTGTCCTGCAGGCCCGGCCCTTTCGCGGGTACAGGCAGGCGATCACTCAGAGCGGGCGCAGCAGGCCAAAGCGCTTGCGCAG  >  NC_002947/1455915‑1456205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.