New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2024610 =	38 (0.710)	3 (0.060)	3/250	NT	7.4%	coding (749/1143 nt)	wbpY	glycosyl transferase WbpY
	?	NC_002947	2024709 =	39 (0.770)					coding (848/1143 nt)	wbpY	glycosyl transferase WbpY

GCCGTTGATCCTCAGTGGGTATCATGGCTGGCGTAGCGAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGCCCGATGATGTA  >  NC_002947/2024563‑2024851                                                                                                                                                   |                                                                                                                                               ctcgagtactggcaggccgaacccttcatagtgcgacgggaaggtgaACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCa                                                                                                                                              >  5:234063‑M1/48‑149 (MQ=255)            ncAGTGGGTATCATGGCTGGCGTAGCGAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCg                                                                                                                                   >  2:292634/2‑149 (MQ=255)                tGGGTATCATGGCTGGCGTAGCGAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCAc                                                                                                                                >  1:268743/1‑148 (MQ=255)                    tagcATGGCGGGCGTTGCGAGGCGATTCACTGACGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCTTTGCCAGTGAAGACTTGCCGCTGCTGTTTGGCGGCGCTCGGCTGTTCACCTTCCCGTATCACTATGa                                                                                                                           <  6:238534/146‑1 (MQ=255)                      tCATGGCTGGCGTAGCGAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGaa                                                                                                                          <  8:285167/148‑1 (MQ=255)                      tCATGGCTGGCGTAGCGAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGaa                                                                                                                          <  5:185626/148‑1 (MQ=255)                      tCATGGCTGGCGTAGCGAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGaa                                                                                                                          <  4:172589/148‑1 (MQ=255)                      tCATGGCTGGCGTAGCGAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAg                                                                                                                         <  7:188844/149‑1 (MQ=255)                                      gAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGt                                                                                                         >  4:321767/1‑149 (MQ=255)                                          cGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGACAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTc                                                                                                     >  3:318346/1‑149 (MQ=255)                                           gATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTc                                                                                                     >  5:216925/1‑148 (MQ=255)                                             ttCACAGCCGTATCGCCAAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGGTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCTTCGCACTTTGATGGGTTCGGCCTGCCAGTGCTCGAg                                                                                                  <  8:6560/149‑1 (MQ=255)                                             tgaacagccgagcgccggcaaacagcagcggcaagtcttcactggcaacgaagccgaggtagcgcgcccagccttcctgctgtgcctgggcgatacggctgtTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTACTCGAg                                                                                                  >  5:234063‑M2/103‑149 (MQ=255)                                                ACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGc                                                                                                <  1:337645‑M1/148‑1 (MQ=255)                                                ACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGc                                                                                                <  2:270932‑M1/148‑1 (MQ=255)                                                 cagccgagcgccggcaaacagcagcggcaagtcttcactagcaacgaagccgaggtagcgcgcccagccttcctgctgtgcctgggcgatacggctgtTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCa                                                                                              >  4:61734‑M2/99‑149 (MQ=255)                                                 CAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCa                                                                                              >  2:337645‑M1/1‑149 (MQ=255)                                                  AGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCAt                                                                                             >  2:268743‑M1/1‑149 (MQ=255)                                                       tATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGa                                                                                           <  6:115151/146‑1 (MQ=255)                                                       tATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGa                                                                                           >  5:115151/1‑146 (MQ=255)                                                            cccAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCgggg                                                                                   >  1:326328/1‑149 (MQ=255)                                                                ggCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTAc                                                                               <  6:216925/149‑1 (MQ=255)                                                                     agcagGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCggtg                                                                          <  3:321767/149‑1 (MQ=255)                                                                        agGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTa                                                                       >  1:222229/1‑149 (MQ=255)                                                                         ggAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCAGCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTAt                                                                      <  1:133329/149‑1 (MQ=255)                                                                         cggcaagtcttcactggcaacgaagccgaggtagcgcgcccagccttcctgctgtgcctgggcgatacggctgtTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTACTCGAGGCCATGAGCTCGGGGGTACCGGTGGTAt                                                                      <  6:234063‑M2/75‑1 (MQ=255)                                                                          gAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTAt                                                                      <  1:292634/148‑1 (MQ=255)                                                                          gAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATg                                                                     >  5:244364/1‑149 (MQ=255)                                                                             ggCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGtt                                                                   >  5:117655/1‑148 (MQ=255)                                                                                  ggCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCaa                                                               <  5:139953/147‑1 (MQ=255)                                                                                   gcgcgcTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAg                                                            >  6:221877/1‑149 (MQ=255)                                                                                       gcTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCtcg                                                        >  4:8642/1‑149 (MQ=255)                                                                                           ccTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTcgtcgt                                                    >  3:310036/1‑149 (MQ=255)                                                                                           ccTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTAACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTcgtcgt                                                    >  1:84105/1‑149 (MQ=255)                                                                                            cTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGtt                                                   <  2:222229/149‑1 (MQ=255)                                                                                                 cTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGc                                                 >  2:43629/1‑146 (MQ=255)                                                                                                             tGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGtt                                  >  2:234212/1‑149 (MQ=255)                                                                                                             tGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGtt                                  <  6:244364/149‑1 (MQ=255)                                                                                                             tGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGtt                                  >  7:39112/1‑149 (MQ=255)                                                                                                             tGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGtt                                  >  1:188781/1‑149 (MQ=255)                                                                                                             tGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGACAGTGCTCGAGGCCATGAGCTCGGGGGTACAGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCCGGtt                                  >  3:18356/1‑149 (MQ=255)                                                                                                                       ccGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGt                         <  6:117655/148‑1 (MQ=255)                                                                                                                          ctgctgTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGTAGGGTTCGGCCTGCCAGTGCTCGAGTCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGAt                     <  3:231410/149‑1 (MQ=255)                                                                                                                          ctgctgTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGAt                     >  7:37750/1‑149 (MQ=255)                                                                                                                           tgctgTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGAtg                    >  7:271525/1‑149 (MQ=255)                                                                                                                             ctgTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGAtgt                   <  4:248100/148‑1 (MQ=255)                                                                                                                                   gCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGcc            >  5:53501/1‑149 (MQ=255)                                                                                                                                          cTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGCCCgatgat     <  1:43629/149‑1 (MQ=255)                                                                                                                                          cTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGCCCgatgat     <  4:318346/149‑1 (MQ=255)                                                                                                                                          cTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGCCCgatgat     <  2:84105/149‑1 (MQ=255)                                                                                                                                           tCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGCCCGatgatg    >  6:337262/1‑149 (MQ=255)                                                                                                                                           tCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGCCCGatgatg    >  6:46789/1‑149 (MQ=255)                                                                                                                                             ggctgtTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGCCCGATGATGTa  <  8:37750‑M2/143‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               GCCGTTGATCCTCAGTGGGTATCATGGCTGGCGTAGCGAGGCGATTCACAGCCGTATCGCCCAGGCACAGCAGGAAGGCTGGGCGCGCTACCTCGGCTTCGTTGCCAGTGAAGACTTGCCGCTGCTGTTTGCCGGCGCTCGGCTGTTCACCTTCCCGTCGCACTATGAAGGGTTCGGCCTGCCAGTGCTCGAGGCCATGAGCTCGGGGGTACCGGTGGTATGTTCCAACAGCTCGTCGTTGCCAGAGGTAGCGGGTTCGGCGGCGTTGATGTGCGCGCCCGATGATGTA  >  NC_002947/2024563‑2024851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.