New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2358022	50 (0.930)	4 (0.080)	3/254	NT	8.2%	coding (289/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	= 2358062	41 (0.790)					coding (249/825 nt)	PP_2072	AraC family transcriptional regulator

TGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAGGTATCGTGGCGATGCGGGTCGTAGC  >  NC_002947/2357919‑2358210                                                                                                                                                |                                                                                                                                                     tGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGccggc                                                                                                                                                 <  1:179555‑M2/149‑6 (MQ=255)   tACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCa                                                                                                                                               >  2:59168/1‑149 (MQ=255)     cGAACGCTTCGCTGGTGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATg                                                                                                                                             >  2:146379/1‑149 (MQ=255)      gAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGc                                                                                                                                            >  8:8815/1‑149 (MQ=255)            ttCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCAt                                                                                                                                      >  1:200842/1‑149 (MQ=255)                        gTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCg                                                                                                                          >  8:169197/1‑149 (MQ=255)                              aCGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTg                                                                                                                      >  7:79815/1‑147 (MQ=255)                                gcgGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTgcag                                                                                                                   >  7:151498/1‑148 (MQ=255)                                  gggTCGCTGGACAGGCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCAc                                                                                                                >  1:127343/1‑149 (MQ=255)                                        cTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCgt                                                                                                          >  2:119797/1‑149 (MQ=255)                                           gACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGtt                                                                                                       <  1:146379/149‑1 (MQ=255)                                                cccGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCg                                                                                                  <  8:214904/149‑1 (MQ=255)                                                           tGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTgg                                                                                       >  3:249724/1‑149 (MQ=255)                                                            gAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGgc                                                                                      >  3:246299/1‑149 (MQ=255)                                                               gggCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGgcg                                                                                     >  2:78190/1‑147 (MQ=255)                                                                ggCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAg                                                                                  >  2:257008/1‑149 (MQ=255)                                                                 gCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGc                                                                                 <  2:200842/149‑1 (MQ=255)                                                                   aaaGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCg                                                                                >  1:58090/1‑148 (MQ=255)                                                                        cTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGGGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCt                                                                          <  7:236393/149‑1 (MQ=255)                                                                         tGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGAGGCGCAGCGAACCCtt                                                                         >  1:168778/1‑149 (MQ=255)                                                                         tGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTACGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCCTGACGCAGCGAACCCtt                                                                         >  3:126340/1‑149 (MQ=255)                                                                           accaccCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCtt                                                                         <  8:79815/147‑1 (MQ=255)                                                                           accaccCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTg                                                                        <  2:58090/148‑1 (MQ=255)                                                                             caccCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTaa                                                                     <  3:254988/149‑1 (MQ=255)                                                                               cccAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATg                                                                   >  3:70911/1‑149 (MQ=255)                                                                                ccAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATgg                                                                  <  8:175961/149‑1 (MQ=255)                                                                                ccAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATg                                                                   >  4:117996/1‑148 (MQ=255)                                                                                 cAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCa                                                                                                                                               <  6:19149/71‑1 (MQ=255)                                                                                 cAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCa                                                                                                                                               >  5:19149/1‑71 (MQ=255)                                                                                  aGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGaa                                                                <  1:78190/149‑1 (MQ=255)                                                                                    cACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGc                                                              <  1:59168/149‑1 (MQ=255)                                                                                        ttCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTg                                                          <  4:246299/149‑1 (MQ=255)                                                                                          cTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGc                                                         <  2:179555/148‑1 (MQ=255)                                                                                             gATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCacac                                                     >  8:155502/1‑149 (MQ=255)                                                                                               tCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCg                                                   >  7:163178/1‑149 (MQ=255)                                                                                                  gTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGccggcactgatccagaacgtgctgggtggtcagcctttgcccttcatcgctggcgggctgtccagcgacccgcgtctgtaccacgccagcgaagcgttcgta                                                <  4:76981‑M2/149‑103 (MQ=255)                                                                                                  gTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGccggcactgatccagaacgtgctgggtggtcagcctttgcccttcatcgctggcgggctgtccagcgacccgcgtct                                                                         >  6:303015‑M2/1‑47 (MQ=255)                                                                                                  gTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGccggcactgatccagaacgtgctgggtggtcagcctttgcccttcatcgctggcgggctgtccagcgacccgcgtct                                                                         <  5:303015‑M2/124‑78 (MQ=255)                                                                                                   tGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCa                                               <  1:119797/149‑1 (MQ=255)                                                                                                     ccGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGc                                             <  2:299676/149‑1 (MQ=255)                                                                                                     ccGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGc                                             <  2:127343/149‑1 (MQ=255)                                                                                                       gggTCGACGTAGGTCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGc                                                                                            <  1:35338/100‑1 (MQ=255)                                                                                                       gggTCGACGTAGGTCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGc                                                                                            >  2:35338/1‑100 (MQ=255)                                                                                                        ggTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTa                                          <  4:249724/149‑1 (MQ=255)                                                                                                            gACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGccggcactgatccagaacgtgctgggtggtcagcctttgcccttcatcgctggcgggctgtccagcgacccgcgtctgtaccacgccagcgaagcgttcgtacaggcagtg                                       >  3:76981‑M2/1‑37 (MQ=255)                                                                                                               gTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGa                                   <  8:151498/149‑1 (MQ=255)                                                                                                                       tGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAg                           <  4:70911/149‑1 (MQ=255)                                                                                                                         cGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAGGt                         <  3:117996/149‑1 (MQ=255)                                                                                                                          ggTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAGGTa                        >  2:287664/1‑149 (MQ=255)                                                                                                                                         cGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAGGTATCGTGGCGATGCgg          <  1:287664/148‑1 (MQ=255)                                                                                                                                         cGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAGGTATCGTGGCGATGCgg          <  4:204992/148‑1 (MQ=255)                                                                                                                                               tGCCGGTCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAGGTATCGTGGCGATGCGGGTCGTAg   >  4:329677/1‑149 (MQ=255)                                                                                                                                                gCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGATATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAGGTATCGTGGCGATGCGGGTCGTAGc  >  7:104019/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     TGTACGAACGCTTCGCTGGCGTGGTACAGACGCGGGTCGCTGGACAGCCCGCCAGCGATGAAGGGCAAAGGCTGACCACCCAGCACGTTCTGGATCAGTGCCGGGTCGACGTAGGCCATGCGGTAGCGAAAGCCTGCGTCGGTGCCGGCCATGCCGTCATGCAGTTCGTCCGGGTGCAGCACCAGCGTGTTGCCCGGTATGCCGTGGCGCAGCGAACCCTTGTAATGGAAGCTTTGCACACCGGCCAGCGTACGGCCGATCGAATAGGTATCGTGGCGATGCGGGTCGTAGC  >  NC_002947/2357919‑2358210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.