New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3547416 =	47 (0.870)	4 (0.080)	3/252	NT	8.7%	coding (361/1377 nt)	PP_3132	polysaccharide transporter
	?	NC_002947	3547489 =	39 (0.760)					coding (434/1377 nt)	PP_3132	polysaccharide transporter

CATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTGG  >  NC_002947/3547340‑3547635                                                                                                                                                      |                                                                                                                                                     agtgcgacaaatagcacgcgcttttgtttcaatgtgcgtaccgacacatctatcttggtggactggaaaccccagaTGGACG‑‑‑‑ACTCGACCTATGCCGCGCCGGTACTGCGGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTg                                                                                                                                                   >  8:265043‑M1/77‑149 (MQ=255)     cgcgGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCt                                                                                                                                                    <  2:13286/148‑1 (MQ=255)     cgcgGTTTACTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGAGGCCATCTg                                                                                                                                                   >  8:286480/1‑149 (MQ=255)      gcgGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTgg                                                                                                                                                  <  6:111448/149‑1 (MQ=255)      gaccaataccacgcgcttttgttggaaagtgcgtaccgccacatctatcttggtggactggaaaccccagaTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTg                                                                                                                                                   >  7:218121‑M1/72‑148 (MQ=255)       cgGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTggg                                                                                                                                                 <  7:229536/149‑1 (MQ=255)       cgGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTggg                                                                                                                                                 <  2:248517/149‑1 (MQ=255)                             aCCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAagatag                                                                                                                            <  4:31813/148‑1 (MQ=255)                              cccTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAagatagat                                                                                                                          <  1:151055/149‑1 (MQ=255)                              cccTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAagatagat                                                                                                                          <  1:156258/149‑1 (MQ=255)                               ccTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGCCGGCGGCCATCTGGGGTTTCCAGTCCACCAagata                                                                                                                             >  1:63791/1‑145 (MQ=255)                               ccTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGCCGGCGGCCATCTGGGGTTTCCAGTCCACCAagata                                                                                                                             <  2:63791/145‑1 (MQ=255)                                 tgctgctgGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTc                                                                                                                                            >  8:196283/1‑128 (MQ=255)                                 tgctgctgGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTc                                                                                                                                            <  7:196283/128‑1 (MQ=255)                                 tgctgctgGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGAtgtg                                                                                                                       >  8:259288/1‑149 (MQ=255)                                        ggCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTAc                                                                                                                >  6:285311/1‑149 (MQ=255)                                               ggAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTggg                                                                                                                                                 <  3:21995/109‑1 (MQ=255)                                               ggAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTggg                                                                                                                                                 >  4:21995/1‑109 (MQ=255)                                                   cTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCcaa                                                                                                     >  1:174621/1‑149 (MQ=255)                                                       gttggCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑aaa                                                                                               <  7:272978/149‑1 (MQ=255)                                                        ttggCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑aaaa                                                                                              <  7:286480/149‑1 (MQ=255)                                                              cAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGt                                                                                        >  8:300937/1‑149 (MQ=255)                                                              cAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGGTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGt                                                                                        <  7:152174/149‑1 (MQ=255)                                                               aaCTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTg                                                                                       <  1:324910/149‑1 (MQ=255)                                                                    gCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTAtt                                                                                  >  2:110057/1‑149 (MQ=255)                                                                     cTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTg                                                                                 >  4:93902/1‑149 (MQ=255)                                                                        aGCTGTTGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTc                                                                              <  4:142452/149‑1 (MQ=255)                                                                        aGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTgg                                                                                <  6:34280/147‑1 (MQ=255)                                                                         gCTGTGGCCGGCAGACTCGACGTATGCCGGGCGGGTACTGTGGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCGATCTGGGGTTTCCAGTACACCAAGATAGATGTGGCGGTTCGCACTTTCCAAC‑‑AATAGCGCGTGGTATTGGTc                                                                              <  4:137470/148‑1 (MQ=255)                                                                         cagatggccgccgacaggccggtgaccgccagtaccatcggcagtaccggcgcggcataggtcgagtcggccggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTc                                                                              >  7:218121‑M2/78‑148 (MQ=255)                                                                             cagatggccgccgacaggccggtgaccgccagtaccatccgcagtaccggcgcggcataggtcgagtcgtccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGTCGGTACGCACATTGAAAC‑‑AAAAGCGCGTGCTATTtgtcgcact                                                                         >  8:265043‑M2/74‑145 (MQ=255)                                                                               gccgccgacaggccggtgaccgccagtaccatcggcagtaccggcgcggcataggtcgagtcggccggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTg                                                                       >  7:68435‑M2/72‑149 (MQ=255)                                                                               GCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCg                                                                                                                    <  4:115131‑M1/106‑1 (MQ=255)                                                                               GCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCg                                                                                                                    >  3:115131‑M1/1‑106 (MQ=255)                                                                                 CGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGcc                                                                     >  3:93902‑M1/1‑149 (MQ=255)                                                                                           gACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGt                                                             <  3:245332/147‑1 (MQ=255)                                                                                             ccTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCg                                                         <  7:259288/149‑1 (MQ=255)                                                                                                   ccGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCtg                                                   >  1:11887/1‑149 (MQ=255)                                                                                                      cgcCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCtggtg                                                >  4:292535/1‑149 (MQ=255)                                                                                                      cgcCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCtggtg                                                <  3:292535/149‑1 (MQ=255)                                                                                                      cgcCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCtggtg                                                <  2:11887/149‑1 (MQ=255)                                                                                                         taccatcggcagtaccggcgcggcataggtcgagtcggccggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGgtggtg                                             <  8:68435‑M2/104‑1 (MQ=255)                                                                                                               tGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGAc                                                                           <  2:193913/113‑1 (MQ=255)                                                                                                               tGCCGATGGTACTGGCGGTCACCGGCCTCTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGAc                                                                           >  1:193913/1‑113 (MQ=255)                                                                                                                        tACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGc                              <  5:104142/149‑1 (MQ=255)                                                                                                                               ggTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTg                                 <  7:144554/139‑1 (MQ=255)                                                                                                                               ggTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTg                                 >  8:144554/1‑139 (MQ=255)                                                                                                                               ggTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGGGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGGGGTGATGCTCGGGCTGGGCTGGCTGa                       >  6:315097/1‑149 (MQ=255)                                                                                                                                   aCCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATCCACGTGCTGGGCTTGATGACCCa                   >  7:97315/1‑149 (MQ=255)                                                                                                                                     cGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACTGATAAGCGGGTGGTATTGGACCCCATTGCCTCGAAGGGGGGGGGCGTGGGGGTGATGGTGGTGATGGGGTTGGTGcccct                   >  1:275613/1‑148 (MQ=255)                                                                                                                                        ccTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGa              >  1:105139/1‑149 (MQ=255)                                                                                                                                                cggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGc                                         >  6:37613‑M2/7‑114 (MQ=255)                                                                                                                                                cggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGc                                         <  5:37613‑M2/108‑1 (MQ=255)                                                                                                                                                    caTCTGGGTTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCGAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTTATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTgg  <  2:174621‑M2/147‑1 (MQ=255)                                                                                                                                                      tCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGc                          <  4:92005/123‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CATCCGCGGTTTCCTGCTGTTTGCCCTTACCCTGCTGCTGGCCCTGGGAGCTTGGTTGGCCCAACTGGCTGAGCTGTGGCCGGCCGACTCGACCTATGCCGCGCCGGTACTGCCGATGGTACTGGCGGTCACCGGCCTGTCGGCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAAC‑‑AAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTGG  >  NC_002947/3547340‑3547635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.